1: Im eo, Chee W, Lim hj, Bender M, Tsai hm, Yang so, Lee H

N, Wong Y, Cantalloube H, Chomilier J, Hochez J, Pothier J, Villoutreix BO,

Zagury JF, Tuffery P.

RPBS: a web resource for structural bioinformatics.

Nucleic Acids Res. 2005 Jul 1;33(Web Server issue):W44-9.

PMID: 15980507 [PubMed - indexed for MEDLINE]

T-Reg Comparator: an analysis tool for the comparison of position weight

matrices.

Nucleic Acids Res. 2005 Jul 1;33(Web Server issue):W438-41.

PMID: 15980506 [PubMed - indexed for MEDLINE]
3001: Chekmenev DS, Haid C, Kel AE.

P-Match: transcription factor binding site search by combining patterns and

weight matrices.

Nucleic Acids Res. 2005 Jul 1;33(Web Server issue):W432-7.

PMID: 15980505 [PubMed - indexed for MEDLINE]
3002: Kankainen M, Holm L.

POCO: discovery of regulatory patterns from promoters of oppositely expressed

gene sets.

Nucleic Acids Res. 2005 Jul 1;33(Web Server issue):W427-31.

PMID: 15980504 [PubMed - indexed for MEDLINE]
3003: Di Cara A, Schmidt K, Hemmings BA, Oakeley EJ.

PromoterPlot: a graphical display of promoter similarities by pattern

recognition.

Nucleic Acids Res. 2005 Jul 1;33(Web Server issue):W423-6.

PMID: 15980503 [PubMed - indexed for MEDLINE]
3004: Vishnevsky OV, Kolchanov NA.

ARGO: a web system for the detection of degenerate motifs and large-scale

recognition of eukaryotic promoters.

Nucleic Acids Res. 2005 Jul 1;33(Web Server issue):W417-22.

PMID: 15980502 [PubMed - indexed for MEDLINE]
3005: Wang G, Yu T, Zhang W.

WordSpy: identifying transcription factor binding motifs by building a

dictionary and learning a grammar.

Nucleic Acids Res. 2005 Jul 1;33(Web Server issue):W412-6.

PMID: 15980501 [PubMed - indexed for MEDLINE]
3006: Jegga AG, Gupta A, Gowrisankar S, Deshmukh MA, Connolly S, Finley K,

Aronow BJ.

CisMols Analyzer: identification of compositionally similar cis-element

clusters in ortholog conserved regions of coordinately expressed genes.

Nucleic Acids Res. 2005 Jul 1;33(Web Server issue):W408-11. Erratum in: Nucleic

Acids Res. 2005;33(13):4377.

PMID: 15980500 [PubMed - indexed for MEDLINE]
3007: Ovcharenko I, Nobrega MA.

Identifying synonymous regulatory elements in vertebrate genomes.

Nucleic Acids Res. 2005 Jul 1;33(Web Server issue):W403-7.

PMID: 15980499 [PubMed - indexed for MEDLINE]

AthaMap web tools for database-assisted identification of combinatorial

cis-regulatory elements and the display of highly conserved transcription factor

binding sites in Arabidopsis thaliana.

Nucleic Acids Res. 2005 Jul 1;33(Web Server issue):W397-402.

PMID: 15980498 [PubMed - indexed for MEDLINE]

TOUCAN 2: the all-inclusive open source workbench for regulatory sequence

analysis.

Nucleic Acids Res. 2005 Jul 1;33(Web Server issue):W393-6.

PMID: 15980497 [PubMed - indexed for MEDLINE]
3010: Sobolev V, Eyal E, Gerzon S, Potapov V, Babor M, Prilusky J, Edelman M.

SPACE: a suite of tools for protein structure prediction and analysis based on

complementarity and environment.

Nucleic Acids Res. 2005 Jul 1;33(Web Server issue):W39-43.

PMID: 15980496 [PubMed - indexed for MEDLINE]
3011: Workman CT, Yin Y, Corcoran DL, Ideker T, Stormo GD, Benos PV.

enoLOGOS: a versatile web tool for energy normalized sequence logos.

Nucleic Acids Res. 2005 Jul 1;33(Web Server issue):W389-92.

PMID: 15980495 [PubMed - indexed for MEDLINE]

The FoldX web server: an online force field.

Nucleic Acids Res. 2005 Jul 1;33(Web Server issue):W382-8.

PMID: 15980494 [PubMed - indexed for MEDLINE]

DeNovoID: a web-based tool for identifying peptides from sequence and mass tags

deduced from de novo peptide sequencing by mass spectroscopy.

Nucleic Acids Res. 2005 Jul 1;33(Web Server issue):W376-81.

PMID: 15980493 [PubMed - indexed for MEDLINE]
3014: Miteva MA, Tuffery P, Villoutreix BO.

PCE: web tools to compute protein continuum electrostatics.

Nucleic Acids Res. 2005 Jul 1;33(Web Server issue):W372-5.

PMID: 15980492 [PubMed - indexed for MEDLINE]

H++: a server for estimating pKas and adding missing hydrogens to

macromolecules.

Nucleic Acids Res. 2005 Jul 1;33(Web Server issue):W368-71.

PMID: 15980491 [PubMed - indexed for MEDLINE]
3016: Schneidman-Duhovny D, Inbar Y, Nussinov R, Wolfson HJ.

PatchDock and SymmDock: servers for rigid and symmetric docking.

Nucleic Acids Res. 2005 Jul 1;33(Web Server issue):W363-7.

PMID: 15980490 [PubMed - indexed for MEDLINE]

Protein structure prediction servers at University College London.

Nucleic Acids Res. 2005 Jul 1;33(Web Server issue):W36-8.

PMID: 15980489 [PubMed - indexed for MEDLINE]

MovieMaker: a web server for rapid rendering of protein motions and

interactions.

Nucleic Acids Res. 2005 Jul 1;33(Web Server issue):W358-62.

PMID: 15980488 [PubMed - indexed for MEDLINE]
3019: Hu Z, Mellor J, Wu J, Yamada T, Holloway D, Delisi C.

VisANT: data-integrating visual framework for biological networks and modules.

Nucleic Acids Res. 2005 Jul 1;33(Web Server issue):W352-7.

PMID: 15980487 [PubMed - indexed for MEDLINE]

EVAcon: a protein contact prediction evaluation service.

Nucleic Acids Res. 2005 Jul 1;33(Web Server issue):W347-51.

PMID: 15980486 [PubMed - indexed for MEDLINE]

POPSCOMP: an automated interaction analysis of biomolecular complexes.

Nucleic Acids Res. 2005 Jul 1;33(Web Server issue):W342-6.

PMID: 15980485 [PubMed - indexed for MEDLINE]

SiteEngines: recognition and comparison of binding sites and protein-protein

interfaces.

Nucleic Acids Res. 2005 Jul 1;33(Web Server issue):W337-41.

PMID: 15980484 [PubMed - indexed for MEDLINE]
3023: Croes D, Couche F, Wodak SJ, van Helden J.

Metabolic PathFinding: inferring relevant pathways in biochemical networks.

Nucleic Acids Res. 2005 Jul 1;33(Web Server issue):W326-30.

PMID: 15980483 [PubMed - indexed for MEDLINE]

BIOVERSE: enhancements to the framework for structural, functional and

contextual modeling of proteins and proteomes.

Nucleic Acids Res. 2005 Jul 1;33(Web Server issue):W324-5.

PMID: 15980482 [PubMed - indexed for MEDLINE]
3025: Binisti C, Salim AA, Tuffery P.

PPG: online generation of protein pictures and animations.

Nucleic Acids Res. 2005 Jul 1;33(Web Server issue):W320-3.

PMID: 15980481 [PubMed - indexed for MEDLINE]

MAVL/StickWRLD for protein: visualizing protein sequence families to detect

non-consensus features.

Nucleic Acids Res. 2005 Jul 1;33(Web Server issue):W315-9.

PMID: 15980480 [PubMed - indexed for MEDLINE]
3027: Dantzer J, Moad C, Heiland R, Mooney S.

MutDB services: interactive structural analysis of mutation data.

Nucleic Acids Res. 2005 Jul 1;33(Web Server issue):W311-4.

PMID: 15980479 [PubMed - indexed for MEDLINE]

I-Mutant2.0: predicting stability changes upon mutation from the protein

sequence or structure.

Nucleic Acids Res. 2005 Jul 1;33(Web Server issue):W306-10.

PMID: 15980478 [PubMed - indexed for MEDLINE]
3029: Magyar C, Gromiha MM, Pujadas G, Tusnady GE, Simon I.

SRide: a server for identifying stabilizing residues in proteins.

Nucleic Acids Res. 2005 Jul 1;33(Web Server issue):W303-5.

PMID: 15980477 [PubMed - indexed for MEDLINE]

The Bioinformatics Links Directory: a compilation of molecular biology web

servers.

Nucleic Acids Res. 2005 Jul 1;33(Web Server issue):W3-24.

PMID: 15980476 [PubMed - indexed for MEDLINE]
3031: Landau M, Mayrose I, Rosenberg Y, Glaser F, Martz E, Pupko T, Ben-Tal N.

ConSurf 2005: the projection of evolutionary conservation scores of residues on

protein structures.

Nucleic Acids Res. 2005 Jul 1;33(Web Server issue):W299-302.

PMID: 15980475 [PubMed - indexed for MEDLINE]
3032: Alkan C, Tuzun E, Buard J, Lethiec F, Eichler EE, Bailey JA, Sahinalp SC.
Manipulating multiple sequence alignments via MaM and WebMaM.

Nucleic Acids Res. 2005 Jul 1;33(Web Server issue):W295-8.

PMID: 15980474 [PubMed - indexed for MEDLINE]
3033: Neshich G, Borro LC, Higa RH, Kuser PR, Yamagishi ME, Franco EH,

Krauchenco JN, Fileto R, Ribeiro AA, Bezerra GB, Velludo TM, Jimenez TS,

Furukawa N, Teshima H, Kitajima K, Bava A, Sarai A, Togawa RC, Mancini AL.

The Diamond STING server.

Nucleic Acids Res. 2005 Jul 1;33(Web Server issue):W29-35.

PMID: 15980473 [PubMed - indexed for MEDLINE]

PRALINE: a multiple sequence alignment toolbox that integrates

homology-extended and secondary structure information.

Nucleic Acids Res. 2005 Jul 1;33(Web Server issue):W289-94.

PMID: 15980472 [PubMed - indexed for MEDLINE]
3035: Jaroszewski L, Rychlewski L, Li Z, Li W, Godzik A.

FFAS03: a server for profile--profile sequence alignments.

Nucleic Acids Res. 2005 Jul 1;33(Web Server issue):W284-8.

PMID: 15980471 [PubMed - indexed for MEDLINE]

One-Block CYRCA: an automated procedure for identifying multiple-block

alignments from single block queries.

Nucleic Acids Res. 2005 Jul 1;33(Web Server issue):W281-3.

PMID: 15980470 [PubMed - indexed for MEDLINE]
3037: Bahir I, Linial M.

ProTeus: identifying signatures in protein termini.

Nucleic Acids Res. 2005 Jul 1;33(Web Server issue):W277-80.

PMID: 15980469 [PubMed - indexed for MEDLINE]

SCANMOT: searching for similar sequences using a simultaneous scan of multiple

sequence motifs.

Nucleic Acids Res. 2005 Jul 1;33(Web Server issue):W274-6.

PMID: 15980468 [PubMed - indexed for MEDLINE]
3039: La D, Livesay DR.

MINER: software for phylogenetic motif identification.

Nucleic Acids Res. 2005 Jul 1;33(Web Server issue):W267-70.

PMID: 15980467 [PubMed - indexed for MEDLINE]

SY.

Nucleic Acids Res. 2005 Jul 1;33(Web Server issue):W262-6.

PMID: 15980466 [PubMed - indexed for MEDLINE]
3041: Gutman R, Berezin C, Wollman R, Rosenberg Y, Ben-Tal N.

QuasiMotiFinder: protein annotation by searching for evolutionarily conserved

motif-like patterns.

Nucleic Acids Res. 2005 Jul 1;33(Web Server issue):W255-61.

PMID: 15980465 [PubMed - indexed for MEDLINE]
3042: Vlahovicek K, Pintar A, Parthasarathi L, Carugo O, Pongor S.

CX, DPX and PRIDE: WWW servers for the analysis and comparison of protein 3D

structures.

Nucleic Acids Res. 2005 Jul 1;33(Web Server issue):W252-4.

PMID: 15980464 [PubMed - indexed for MEDLINE]
3043: Pillai S, Silventoinen V, Kallio K, Senger M, Sobhany S, Tate J, Velankar

S, Golovin A, Henrick K, Rice P, Stoehr P, Lopez R.

SOAP-based services provided by the European Bioinformatics Institute.

Nucleic Acids Res. 2005 Jul 1;33(Web Server issue):W25-8.

PMID: 15980463 [PubMed - indexed for MEDLINE]
3044: Friedberg I, Godzik A.

Fragnostic: walking through protein structure space.

Nucleic Acids Res. 2005 Jul 1;33(Web Server issue):W249-51.

PMID: 15980462 [PubMed - indexed for MEDLINE]

The HHpred interactive server for protein homology detection and structure

prediction.

Nucleic Acids Res. 2005 Jul 1;33(Web Server issue):W244-8.

PMID: 15980461 [PubMed - indexed for MEDLINE]
3046: Gruber M, Soding J, Lupas AN.

REPPER--repeats and their periodicities in fibrous proteins.

Nucleic Acids Res. 2005 Jul 1;33(Web Server issue):W239-43.

PMID: 15980460 [PubMed - indexed for MEDLINE]

DiANNA: a web server for disulfide connectivity prediction.

Nucleic Acids Res. 2005 Jul 1;33(Web Server issue):W230-2.

PMID: 15980459 [PubMed - indexed for MEDLINE]

KinasePhos: a web tool for identifying protein kinase-specific phosphorylation

sites.

Nucleic Acids Res. 2005 Jul 1;33(Web Server issue):W226-9.

SEARCHGTr: a program for analysis of glycosyltransferases involved in

glycosylation of secondary metabolites.

Nucleic Acids Res. 2005 Jul 1;33(Web Server issue):W220-5.

PMID: 15980457 [PubMed - indexed for MEDLINE]
3050: Bohne-Lang A, von der Lieth CW.

GlyProt: in silico glycosylation of proteins.

Nucleic Acids Res. 2005 Jul 1;33(Web Server issue):W214-9.

PMID: 15980456 [PubMed - indexed for MEDLINE]

GraBCas: a bioinformatics tool for score-based prediction of Caspase- and

Granzyme B-cleavage sites in protein sequences.

Nucleic Acids Res. 2005 Jul 1;33(Web Server issue):W208-13.

PMID: 15980455 [PubMed - indexed for MEDLINE]
3052: Fariselli P, Finelli M, Rossi I, Amico M, Zauli A, Martelli PL, Casadio

R.

Nucleic Acids Res. 2005 Jul 1;33(Web Server issue):W198-201.

PMID: 15980454 [PubMed - indexed for MEDLINE]
3053: Zhou H, Zhang C, Liu S, Zhou Y.

Web-based toolkits for topology prediction of transmembrane helical proteins,

fold recognition, structure and binding scoring, folding-kinetics analysis and

comparative analysis of domain combinations.

Nucleic Acids Res. 2005 Jul 1;33(Web Server issue):W193-7.

PMID: 15980453 [PubMed - indexed for MEDLINE]

TMB-Hunt: a web server to screen sequence sets for transmembrane beta-barrel

proteins.

Nucleic Acids Res. 2005 Jul 1;33(Web Server issue):W188-92.

PMID: 15980452 [PubMed - indexed for MEDLINE]
3055: Xue Y, Zhou F, Zhu M, Ahmed K, Chen G, Yao X.

GPS: a comprehensive www server for phosphorylation sites prediction.

Nucleic Acids Res. 2005 Jul 1;33(Web Server issue):W184-7.

PMID: 15980451 [PubMed - indexed for MEDLINE]

PREDBALB/c: a system for the prediction of peptide binding to H2d molecules, a

haplotype of the BALB/c mouse.

Nucleic Acids Res. 2005 Jul 1;33(Web Server issue):W180-3.

PMID: 15980450 [PubMed - indexed for MEDLINE]
3057: Zhang GL, Khan AM, Srinivasan KN, August JT, Brusic V.

MULTIPRED: a computational system for prediction of promiscuous HLA binding

peptides.

Nucleic Acids Res. 2005 Jul 1;33(Web Server issue):W172-9.

PMID: 15980449 [PubMed - indexed for MEDLINE]
3058: Kulkarni-Kale U, Bhosle S, Kolaskar AS.

CEP: a conformational epitope prediction server.

Nucleic Acids Res. 2005 Jul 1;33(Web Server issue):W168-71.

PMID: 15980448 [PubMed - indexed for MEDLINE]

TMBETA-NET: discrimination and prediction of membrane spanning beta-strands in

outer membrane proteins.

Nucleic Acids Res. 2005 Jul 1;33(Web Server issue):W164-7.

PMID: 15980447 [PubMed - indexed for MEDLINE]
3060: George RA, Lin K, Heringa J.

Scooby-domain: prediction of globular domains in protein sequence.

Nucleic Acids Res. 2005 Jul 1;33(Web Server issue):W160-3.

PMID: 15980446 [PubMed - indexed for MEDLINE]

GRIFFIN: a system for predicting GPCR-G-protein coupling selectivity using a

support vector machine and a hidden Markov model.

Nucleic Acids Res. 2005 Jul 1;33(Web Server issue):W148-53.

PMID: 15980445 [PubMed - indexed for MEDLINE]
3062: Bhasin M, Raghava GP.

GPCRsclass: a web tool for the classification of amine type of

G-protein-coupled receptors.

Nucleic Acids Res. 2005 Jul 1;33(Web Server issue):W143-7.

PMID: 15980444 [PubMed - indexed for MEDLINE]
3063: Reche PA, Reinherz EL.

PEPVAC: a web server for multi-epitope vaccine development based on the

prediction of supertypic MHC ligands.

Nucleic Acids Res. 2005 Jul 1;33(Web Server issue):W138-42.

PMID: 15980443 [PubMed - indexed for MEDLINE]
3064: Ausiello G, Zanzoni A, Peluso D, Via A, Helmer-Citterich M.

pdbFun: mass selection and fast comparison of annotated PDB residues.

Nucleic Acids Res. 2005 Jul 1;33(Web Server issue):W133-7.

PMID: 15980442 [PubMed - indexed for MEDLINE]

DIAL: a web-based server for the automatic identification of structural domains

in proteins.

Nucleic Acids Res. 2005 Jul 1;33(Web Server issue):W130-2.

PMID: 15980441 [PubMed - indexed for MEDLINE]
3066: Krishnadev O, Rekha N, Pandit SB, Abhiman S, Mohanty S, Swapna LS, Gore

S, Srinivasan N.

PRODOC: a resource for the comparison of tethered protein domain architectures

with in-built information on remotely related domain families.

Nucleic Acids Res. 2005 Jul 1;33(Web Server issue):W126-9.

PMID: 15980440 [PubMed - indexed for MEDLINE]

PhyloDome--visualization of taxonomic distributions of domains occurring in

eukaryote protein sequence sets.

Nucleic Acids Res. 2005 Jul 1;33(Web Server issue):W121-5.

PMID: 15980439 [PubMed - indexed for MEDLINE]
3068: Quevillon E, Silventoinen V, Pillai S, Harte N, Mulder N, Apweiler R,

Lopez R.

InterProScan: protein domains identifier.

Nucleic Acids Res. 2005 Jul 1;33(Web Server issue):W116-20.

PMID: 15980438 [PubMed - indexed for MEDLINE]
3069: Zemla A, Zhou CE, Slezak T, Kuczmarski T, Rama D, Torres C, Sawicka D,

Barsky D.

AS2TS system for protein structure modeling and analysis.

Nucleic Acids Res. 2005 Jul 1;33(Web Server issue):W111-5.

PMID: 15980437 [PubMed - indexed for MEDLINE]
3070: Xie D, Li A, Wang M, Fan Z, Feng H.

LOCSVMPSI: a web server for subcellular localization of eukaryotic proteins

using SVM and profile of PSI-BLAST.

Nucleic Acids Res. 2005 Jul 1;33(Web Server issue):W105-10.

PMID: 15980436 [PubMed - indexed for MEDLINE]
3071: Smith AR.

J & J's Campaign for Nursing's Future: the gift that keeps on giving.

Nurs Econ. 2005 Jul-Aug;23(4):199-200. No abstract available.

PMID: 16189985 [PubMed - indexed for MEDLINE]

Awareness and perceptions of the Johnson & Johnson Campaign for Nursing's

Future: views from nursing students, RNs, and CNOs.

Nurs Econ. 2005 Jul-Aug;23(4):150-6, 180, 147.

PMID: 16189979 [PubMed - indexed for MEDLINE]
3073: Skiba DJ.

E-portfolios, webfolio, and e-dentity: promises and challenges.

Nurs Educ Perspect. 2005 Jul-Aug;26(4):246-7. Review. No abstract available.

PMID: 16175917 [PubMed - indexed for MEDLINE]

Updating the green journal.

Obstet Gynecol. 2005 Jul;106(1):2. No abstract available.

PMID: 15994608 [PubMed - indexed for MEDLINE]

Oncology Nursing Society environmental scan 2004.

Oncol Nurs Forum. 2005 Jul 1;32(4):742. No abstract available.

PMID: 15990902 [PubMed - indexed for MEDLINE]

Labeling meds is 2006 JCAHO goal.

OR Manager. 2005 Jul;21(7):10. No abstract available.

PMID: 16092616 [PubMed - indexed for MEDLINE]

Breast is best, but it could be better: what is in breast milk that should not

be?

Pediatr Nurs. 2005 Jul-Aug;31(4):333-8. Review. No abstract available.

Interpreter services in pediatric nursing.

Pediatr Nurs. 2005 Jul-Aug;31(4):292-6. Review.

PMID: 16229125 [PubMed - indexed for MEDLINE]

P.

Pediatrics. 2005 Jul;116(1):303-26. Review.

PMID: 16001458 [PubMed - indexed for MEDLINE]
3080: Vyas H, Summers R.

An information-driven approach to pharmacogenomics.

Pharmacogenomics. 2005 Jul;6(5):473-80. Review.

PMID: 16013997 [PubMed - indexed for MEDLINE]

Sakurai T, Shinozaki K.

A resource of 5,814 dissociation transposon-tagged and sequence-indexed lines

of Arabidopsis transposed from start loci on chromosome 5.

Plant Cell Physiol. 2005 Jul;46(7):1149-53. Epub 2005 Apr 19.

PMID: 15840642 [PubMed - indexed for MEDLINE]

T, Misawa N, Saito K, Shibata D.

KaPPA-view: a web-based analysis tool for integration of transcript and

metabolite data on plant metabolic pathway maps.

Plant Physiol. 2005 Jul;138(3):1289-300.

PMID: 16010003 [PubMed - indexed for MEDLINE]

Web-based training for EMT continuing education.

Prehosp Emerg Care. 2005 Jul-Sep;9(3):333-7.

PMID: 16147485 [PubMed - indexed for MEDLINE]

Internet-accessible emergency department workload information reduces ambulance

diversion.

Prehosp Emerg Care. 2005 Jul-Sep;9(3):285-91.

PMID: 16147477 [PubMed - indexed for MEDLINE]
3085: Mukhtar Q, Brody ER, Mehta P, Camponeschi J, Clark CK, Desai J,

Friedrichs M, Kemple AM, Krapfl HR, Ralls B, Sekhobo JP.

An innovative approach to enhancing the surveillance capacity of state-based

diabetes prevention and control programs: the Diabetes Indicators and Data

Sources Internet Tool (DIDIT).