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HUGE: a database for human KIAA proteins, a 2004 update integrating HUGEppi and

ROUGE.

Nucleic Acids Res. 2004 Jan 1;32(Database issue):D502-4.



PMID: 14681467 [PubMed - indexed for MEDLINE]
7892: Peri S, Navarro JD, Kristiansen TZ, Amanchy R, Surendranath V, Muthusamy

B, Gandhi TK, Chandrika KN, Deshpande N, Suresh S, Rashmi BP, Shanker K, Padma

N, Niranjan V, Harsha HC, Talreja N, Vrushabendra BM, Ramya MA, Yatish AJ, Joy

M, Shivashankar HN, Kavitha MP, Menezes M, Choudhury DR, Ghosh N, Saravana R,

Chandran S, Mohan S, Jonnalagadda CK, Prasad CK, Kumar-Sinha C, Deshpande KS,

Pandey A.

Human protein reference database as a discovery resource for proteomics.

Nucleic Acids Res. 2004 Jan 1;32(Database issue):D497-501.

PMID: 14681466 [PubMed - indexed for MEDLINE]
7893: Karolchik D, Hinrichs AS, Furey TS, Roskin KM, Sugnet CW, Haussler D,

Kent WJ.

The UCSC Table Browser data retrieval tool.

Nucleic Acids Res. 2004 Jan 1;32(Database issue):D493-6.

PMID: 14681465 [PubMed - indexed for MEDLINE]
7894: Dagan T, Sorek R, Sharon E, Ast G, Graur D.

AluGene: a database of Alu elements incorporated within protein-coding genes.

Nucleic Acids Res. 2004 Jan 1;32(Database issue):D489-92.

PMID: 14681464 [PubMed - indexed for MEDLINE]


7895: Uenishi H, Eguchi T, Suzuki K, Sawazaki T, Toki D, Shinkai H, Okumura N,

Hamasima N, Awata T.

PEDE (Pig EST Data Explorer): construction of a database for ESTs derived from

porcine full-length cDNA libraries.

Nucleic Acids Res. 2004 Jan 1;32(Database issue):D484-8.

PMID: 14681463 [PubMed - indexed for MEDLINE]


7896: Divina P, Forejt J.

The Mouse SAGE Site: database of public mouse SAGE libraries.

Nucleic Acids Res. 2004 Jan 1;32(Database issue):D482-3.

PMID: 14681462 [PubMed - indexed for MEDLINE]


7897: Bult CJ, Blake JA, Richardson JE, Kadin JA, Eppig JT, Baldarelli RM,

Barsanti K, Baya M, Beal JS, Boddy WJ, Bradt DW, Burkart DL, Butler NE, Campbell

J, Corey R, Corbani LE, Cousins S, Dene H, Drabkin HJ, Frazer K, Garippa DM,

Glass LH, Goldsmith CW, Grant PL, King BL, Lennon-Pierce M, Lewis J, Lu I, Lutz

CM, Maltais LJ, McKenzie LM, Miers D, Modrusan D, Ni L, Ormsby JE, Qi D,

Ramachandran S, Reddy TB, Reed DJ, Sinclair R, Shaw DR, Smith CL, Szauter P,

Taylor B, Vanden Borre P, Walker M, Washburn L, Witham I, Winslow J, Zhu Y;

Mouse Genome Database Group.

The Mouse Genome Database (MGD): integrating biology with the genome.

Nucleic Acids Res. 2004 Jan 1;32(Database issue):D476-81.

PMID: 14681461 [PubMed - indexed for MEDLINE]
7898: Nagashima T, Matsuda H, Silva DG, Petrovsky N, Konagaya A, Schonbach C,

Kasukawa T, Arakawa T, Carninci P, Kawai J, Hayashizaki Y; RIKEN GER Group;

Genome Science Laoratory Members.

FREP: a database of functional repeats in mouse cDNAs.

Nucleic Acids Res. 2004 Jan 1;32(Database issue):D471-5.

PMID: 14681460 [PubMed - indexed for MEDLINE]


7899: Birney E, Andrews D, Bevan P, Caccamo M, Cameron G, Chen Y, Clarke L,

Coates G, Cox T, Cuff J, Curwen V, Cutts T, Down T, Durbin R, Eyras E,

Fernandez-Suarez XM, Gane P, Gibbins B, Gilbert J, Hammond M, Hotz H, Iyer V,

Kahari A, Jekosch K, Kasprzyk A, Keefe D, Keenan S, Lehvaslaiho H, McVicker G,

Melsopp C, Meidl P, Mongin E, Pettett R, Potter S, Proctor G, Rae M, Searle S,

Slater G, Smedley D, Smith J, Spooner W, Stabenau A, Stalker J, Storey R,

Ureta-Vidal A, Woodwark C, Clamp M, Hubbard T.

Ensembl 2004.

Nucleic Acids Res. 2004 Jan 1;32(Database issue):D468-70.

PMID: 14681459 [PubMed - indexed for MEDLINE]


7900: Cotter D, Guda P, Fahy E, Subramaniam S.

MitoProteome: mitochondrial protein sequence database and annotation system.

Nucleic Acids Res. 2004 Jan 1;32(Database issue):D463-7.

PMID: 14681458 [PubMed - indexed for MEDLINE]


7901: Andreoli C, Prokisch H, Hortnagel K, Mueller JC, Munsterkotter M, Scharfe

C, Meitinger T.

MitoP2, an integrated database on mitochondrial proteins in yeast and man.

Nucleic Acids Res. 2004 Jan 1;32(Database issue):D459-62.

PMID: 14681457 [PubMed - indexed for MEDLINE]
7902: Chen M, Lin S, Hofestaedt R.

STCDB: Signal Transduction Classification Database.

Nucleic Acids Res. 2004 Jan 1;32(Database issue):D456-8.

PMID: 14681456 [PubMed - indexed for MEDLINE]


7903: Hermjakob H, Montecchi-Palazzi L, Lewington C, Mudali S, Kerrien S,

Orchard S, Vingron M, Roechert B, Roepstorff P, Valencia A, Margalit H,

Armstrong J, Bairoch A, Cesareni G, Sherman D, Apweiler R.

IntAct: an open source molecular interaction database.

Nucleic Acids Res. 2004 Jan 1;32(Database issue):D452-5.

PMID: 14681455 [PubMed - indexed for MEDLINE]


7904: Salwinski L, Miller CS, Smith AJ, Pettit FK, Bowie JU, Eisenberg D.

The Database of Interacting Proteins: 2004 update.

Nucleic Acids Res. 2004 Jan 1;32(Database issue):D449-51.

PMID: 14681454 [PubMed - indexed for MEDLINE]


7905: Lemer C, Antezana E, Couche F, Fays F, Santolaria X, Janky R, Deville Y,

Richelle J, Wodak SJ.

The aMAZE LightBench: a web interface to a relational database of cellular

processes.

Nucleic Acids Res. 2004 Jan 1;32(Database issue):D443-8.

PMID: 14681453 [PubMed - indexed for MEDLINE]


7906: Krieger CJ, Zhang P, Mueller LA, Wang A, Paley S, Arnaud M, Pick J, Rhee

SY, Karp PD.

MetaCyc: a multiorganism database of metabolic pathways and enzymes.

Nucleic Acids Res. 2004 Jan 1;32(Database issue):D438-42.

PMID: 14681452 [PubMed - indexed for MEDLINE]
7907: Fleischmann A, Darsow M, Degtyarenko K, Fleischmann W, Boyce S, Axelsen

KB, Bairoch A, Schomburg D, Tipton KF, Apweiler R.

IntEnz, the integrated relational enzyme database.

Nucleic Acids Res. 2004 Jan 1;32(Database issue):D434-7.

PMID: 14681451 [PubMed - indexed for MEDLINE]
7908: Schomburg I, Chang A, Ebeling C, Gremse M, Heldt C, Huhn G, Schomburg D.

BRENDA, the enzyme database: updates and major new developments.

Nucleic Acids Res. 2004 Jan 1;32(Database issue):D431-3.

PMID: 14681450 [PubMed - indexed for MEDLINE]


7909: Parkinson J, Whitton C, Schmid R, Thomson M, Blaxter M.

NEMBASE: a resource for parasitic nematode ESTs.

Nucleic Acids Res. 2004 Jan 1;32(Database issue):D427-30.

PMID: 14681449 [PubMed - indexed for MEDLINE]


7910: Wylie T, Martin JC, Dante M, Mitreva MD, Clifton SW, Chinwalla A,

Waterston RH, Wilson RK, McCarter JP.

Nematode.net: a tool for navigating sequences from parasitic and free-living

nematodes.

Nucleic Acids Res. 2004 Jan 1;32(Database issue):D423-6.

PMID: 14681448 [PubMed - indexed for MEDLINE]


7911: Srinivasan J, Otto GW, Kahlow U, Geisler R, Sommer RJ.

AppaDB: an AcedB database for the nematode satellite organism Pristionchus

pacificus.

Nucleic Acids Res. 2004 Jan 1;32(Database issue):D421-2.

PMID: 14681447 [PubMed - indexed for MEDLINE]
7912: Kelso RJ, Buszczak M, Quinones AT, Castiblanco C, Mazzalupo S, Cooley L.

Flytrap, a database documenting a GFP protein-trap insertion screen in

Drosophila melanogaster.

Nucleic Acids Res. 2004 Jan 1;32(Database issue):D418-20.

PMID: 14681446 [PubMed - indexed for MEDLINE]
7913: Harris TW, Chen N, Cunningham F, Tello-Ruiz M, Antoshechkin I, Bastiani

C, Bieri T, Blasiar D, Bradnam K, Chan J, Chen CK, Chen WJ, Davis P, Kenny E,

Kishore R, Lawson D, Lee R, Muller HM, Nakamura C, Ozersky P, Petcherski A,

Rogers A, Sabo A, Schwarz EM, Van Auken K, Wang Q, Durbin R, Spieth J, Sternberg

PW, Stein LD.

WormBase: a multi-species resource for nematode biology and genomics.

Nucleic Acids Res. 2004 Jan 1;32(Database issue):D411-7.

PMID: 14681445 [PubMed - indexed for MEDLINE]


7914: Gunsalus KC, Yueh WC, MacMenamin P, Piano F.

RNAiDB and PhenoBlast: web tools for genome-wide phenotypic mapping projects.

Nucleic Acids Res. 2004 Jan 1;32(Database issue):D406-10.

PMID: 14681444 [PubMed - indexed for MEDLINE]


7915: Mabey JE, Anderson MJ, Giles PF, Miller CJ, Attwood TK, Paton NW,

Bornberg-Bauer E, Robson GD, Oliver SG, Denning DW.

CADRE: the Central Aspergillus Data REpository.

Nucleic Acids Res. 2004 Jan 1;32(Database issue):D401-5.

PMID: 14681443 [PubMed - indexed for MEDLINE]
7916: Alkharouf NW, Matthews BF.

SGMD: the Soybean Genomics and Microarray Database.

Nucleic Acids Res. 2004 Jan 1;32(Database issue):D398-400.

PMID: 14681442 [PubMed - indexed for MEDLINE]


7917: Lawrence CJ, Dong Q, Polacco ML, Seigfried TE, Brendel V.

MaizeGDB, the community database for maize genetics and genomics.

Nucleic Acids Res. 2004 Jan 1;32(Database issue):D393-7.

PMID: 14681441 [PubMed - indexed for MEDLINE]


7918: Komatsu S, Kojima K, Suzuki K, Ozaki K, Higo K.

Rice Proteome Database based on two-dimensional polyacrylamide gel

electrophoresis: its status in 2003.

Nucleic Acids Res. 2004 Jan 1;32(Database issue):D388-92.

PMID: 14681440 [PubMed - indexed for MEDLINE]
7919: Yazaki J, Kojima K, Suzuki K, Kishimoto N, Kikuchi S.

The Rice PIPELINE: a unification tool for plant functional genomics.

Nucleic Acids Res. 2004 Jan 1;32(Database issue):D383-7.

PMID: 14681439 [PubMed - indexed for MEDLINE]


7920: Zhao W, Wang J, He X, Huang X, Jiao Y, Dai M, Wei S, Fu J, Chen Y, Ren X,

Zhang Y, Ni P, Zhang J, Li S, Wang J, Wong GK, Zhao H, Yu J, Yang H, Wang J.

BGI-RIS: an integrated information resource and comparative analysis workbench

for rice genomics.

Nucleic Acids Res. 2004 Jan 1;32(Database issue):D377-82.

PMID: 14681438 [PubMed - indexed for MEDLINE]


7921: Schoof H, Ernst R, Nazarov V, Pfeifer L, Mewes HW, Mayer KF.

MIPS Arabidopsis thaliana Database (MAtDB): an integrated biological knowledge

resource for plant genomics.

Nucleic Acids Res. 2004 Jan 1;32(Database issue):D373-6.

PMID: 14681437 [PubMed - indexed for MEDLINE]
7922: Steffens NO, Galuschka C, Schindler M, Bulow L, Hehl R.

AthaMap: an online resource for in silico transcription factor binding sites in

the Arabidopsis thaliana genome.

Nucleic Acids Res. 2004 Jan 1;32(Database issue):D368-72.

PMID: 14681436 [PubMed - indexed for MEDLINE]
7923: Ruiz M, Rouard M, Raboin LM, Lartaud M, Lagoda P, Courtois B.

TropGENE-DB, a multi-tropical crop information system.

Nucleic Acids Res. 2004 Jan 1;32(Database issue):D364-7.

PMID: 14681435 [PubMed - indexed for MEDLINE]


7924: Ouyang S, Buell CR.

The TIGR Plant Repeat Databases: a collective resource for the identification

of repetitive sequences in plants.

Nucleic Acids Res. 2004 Jan 1;32(Database issue):D360-3.

PMID: 14681434 [PubMed - indexed for MEDLINE]
7925: Dong Q, Schlueter SD, Brendel V.

PlantGDB, plant genome database and analysis tools.

Nucleic Acids Res. 2004 Jan 1;32(Database issue):D354-9.

PMID: 14681433 [PubMed - indexed for MEDLINE]


7926: Mohseni-Zadeh S, Louis A, Brezellec P, Risler JL.

PHYTOPROT: a database of clusters of plant proteins.

Nucleic Acids Res. 2004 Jan 1;32(Database issue):D351-3.

PMID: 14681432 [PubMed - indexed for MEDLINE]


7927: Samson F, Brunaud V, Duchene S, De Oliveira Y, Caboche M, Lecharny A,

Aubourg S.

FLAGdb++: a database for the functional analysis of the Arabidopsis genome.

Nucleic Acids Res. 2004 Jan 1;32(Database issue):D347-50.

PMID: 14681431 [PubMed - indexed for MEDLINE]
7928: Luchtan M, Warade C, Weatherly DB, Degrave WM, Tarleton RL, Kissinger JC.
TcruziDB: an integrated Trypanosoma cruzi genome resource.

Nucleic Acids Res. 2004 Jan 1;32(Database issue):D344-6.

PMID: 14681430 [PubMed - indexed for MEDLINE]
7929: Hertz-Fowler C, Peacock CS, Wood V, Aslett M, Kerhornou A, Mooney P,

Tivey A, Berriman M, Hall N, Rutherford K, Parkhill J, Ivens AC, Rajandream MA,

Barrell B.

GeneDB: a resource for prokaryotic and eukaryotic organisms.

Nucleic Acids Res. 2004 Jan 1;32(Database issue):D339-43.

PMID: 14681429 [PubMed - indexed for MEDLINE]


7930: Watanabe J, Suzuki Y, Sasaki M, Sugano S.

Full-malaria 2004: an enlarged database for comparative studies of full-length

cDNAs of malaria parasites, Plasmodium species.

Nucleic Acids Res. 2004 Jan 1;32(Database issue):D334-8.

PMID: 14681428 [PubMed - indexed for MEDLINE]
7931: Kreppel L, Fey P, Gaudet P, Just E, Kibbe WA, Chisholm RL, Kimmel AR.

dictyBase: a new Dictyostelium discoideum genome database.

Nucleic Acids Res. 2004 Jan 1;32(Database issue):D332-3.

PMID: 14681427 [PubMed - indexed for MEDLINE]


7932: Puiu D, Enomoto S, Buck GA, Abrahamsen MS, Kissinger JC.

CryptoDB: the Cryptosporidium genome resource.

Nucleic Acids Res. 2004 Jan 1;32(Database issue):D329-31.

PMID: 14681426 [PubMed - indexed for MEDLINE]


7933: Li L, Crabtree J, Fischer S, Pinney D, Stoeckert CJ Jr, Sibley LD, Roos

DS.


ApiEST-DB: analyzing clustered EST data of the apicomplexan parasites.

Nucleic Acids Res. 2004 Jan 1;32(Database issue):D326-8.

PMID: 14681425 [PubMed - indexed for MEDLINE]
7934: Lelandais G, Le Crom S, Devaux F, Vialette S, Church GM, Jacq C, Marc P.

yMGV: a cross-species expression data mining tool.

Nucleic Acids Res. 2004 Jan 1;32(Database issue):D323-5.

PMID: 14681424 [PubMed - indexed for MEDLINE]


7935: Saito TL, Ohtani M, Sawai H, Sano F, Saka A, Watanabe D, Yukawa M, Ohya

Y, Morishita S.

SCMD: Saccharomyces cerevisiae Morphological Database.

Nucleic Acids Res. 2004 Jan 1;32(Database issue):D319-22.

PMID: 14681423 [PubMed - indexed for MEDLINE]
7936: Sherman D, Durrens P, Beyne E, Nikolski M, Souciet JL; Genolevures

Consortium.

Genolevures: comparative genomics and molecular evolution of hemiascomycetous

yeasts.


Nucleic Acids Res. 2004 Jan 1;32(Database issue):D315-8.

PMID: 14681422 [PubMed - indexed for MEDLINE]


7937: Christie KR, Weng S, Balakrishnan R, Costanzo MC, Dolinski K, Dwight SS,

Engel SR, Feierbach B, Fisk DG, Hirschman JE, Hong EL, Issel-Tarver L, Nash R,

Sethuraman A, Starr B, Theesfeld CL, Andrada R, Binkley G, Dong Q, Lane C,

Schroeder M, Botstein D, Cherry JM.

Saccharomyces Genome Database (SGD) provides tools to identify and analyze

sequences from Saccharomyces cerevisiae and related sequences from other

organisms.

Nucleic Acids Res. 2004 Jan 1;32(Database issue):D311-4.

PMID: 14681421 [PubMed - indexed for MEDLINE]
7938: Barre A, de Daruvar A, Blanchard A.

MolliGen, a database dedicated to the comparative genomics of Mollicutes.

Nucleic Acids Res. 2004 Jan 1;32(Database issue):D307-10.

PMID: 14681420 [PubMed - indexed for MEDLINE]


7939: Salgado H, Gama-Castro S, Martinez-Antonio A, Diaz-Peredo E,

Sanchez-Solano F, Peralta-Gil M, Garcia-Alonso D, Jimenez-Jacinto V,

Santos-Zavaleta A, Bonavides-Martinez C, Collado-Vides J.

RegulonDB (version 4.0): transcriptional regulation, operon organization and

growth conditions in Escherichia coli K-12.

Nucleic Acids Res. 2004 Jan 1;32(Database issue):D303-6.

PMID: 14681419 [PubMed - indexed for MEDLINE]
7940: Serres MH, Goswami S, Riley M.

GenProtEC: an updated and improved analysis of functions of Escherichia coli

K-12 proteins.

Nucleic Acids Res. 2004 Jan 1;32(Database issue):D300-2.

PMID: 14681418 [PubMed - indexed for MEDLINE]
7941: Chaudhuri RR, Khan AM, Pallen MJ.

coliBASE: an online database for Escherichia coli, Shigella and Salmonella

comparative genomics.

Nucleic Acids Res. 2004 Jan 1;32(Database issue):D296-9.

PMID: 14681417 [PubMed - indexed for MEDLINE]
7942: Sundararaj S, Guo A, Habibi-Nazhad B, Rouani M, Stothard P, Ellison M,

Wishart DS.

The CyberCell Database (CCDB): a comprehensive, self-updating, relational

database to coordinate and facilitate in silico modeling of Escherichia coli.

Nucleic Acids Res. 2004 Jan 1;32(Database issue):D293-5.

PMID: 14681416 [PubMed - indexed for MEDLINE]


7943: Kulkarni-Kale U, Bhosle S, Manjari GS, Kolaskar AS.

VirGen: a comprehensive viral genome resource.

Nucleic Acids Res. 2004 Jan 1;32(Database issue):D289-92.

PMID: 14681415 [PubMed - indexed for MEDLINE]


7944: Ren Q, Kang KH, Paulsen IT.

TransportDB: a relational database of cellular membrane transport systems.

Nucleic Acids Res. 2004 Jan 1;32(Database issue):D284-8.

PMID: 14681414 [PubMed - indexed for MEDLINE]


7945: Siew N, Azaria Y, Fischer D.

The ORFanage: an ORFan database.

Nucleic Acids Res. 2004 Jan 1;32(Database issue):D281-3.

PMID: 14681413 [PubMed - indexed for MEDLINE]


7946: Kanehisa M, Goto S, Kawashima S, Okuno Y, Hattori M.

The KEGG resource for deciphering the genome.

Nucleic Acids Res. 2004 Jan 1;32(Database issue):D277-80.

PMID: 14681412 [PubMed - indexed for MEDLINE]


7947: Suhre K, Claverie JM.

FusionDB: a database for in-depth analysis of prokaryotic gene fusion events.

Nucleic Acids Res. 2004 Jan 1;32(Database issue):D273-6.

PMID: 14681411 [PubMed - indexed for MEDLINE]


7948: Zhang R, Ou HY, Zhang CT.

DEG: a database of essential genes.

Nucleic Acids Res. 2004 Jan 1;32(Database issue):D271-2.

PMID: 14681410 [PubMed - indexed for MEDLINE]


7949: Bodenreider O.

The Unified Medical Language System (UMLS): integrating biomedical terminology.

Nucleic Acids Res. 2004 Jan 1;32(Database issue):D267-70.

PMID: 14681409 [PubMed - indexed for MEDLINE]


7950: Camon E, Magrane M, Barrell D, Lee V, Dimmer E, Maslen J, Binns D, Harte

N, Lopez R, Apweiler R.

The Gene Ontology Annotation (GOA) Database: sharing knowledge in Uniprot with

Gene Ontology.

Nucleic Acids Res. 2004 Jan 1;32(Database issue):D262-6.

PMID: 14681408 [PubMed - indexed for MEDLINE]


7951: Harris MA, Clark J, Ireland A, Lomax J, Ashburner M, Foulger R, Eilbeck

K, Lewis S, Marshall B, Mungall C, Richter J, Rubin GM, Blake JA, Bult C, Dolan

M, Drabkin H, Eppig JT, Hill DP, Ni L, Ringwald M, Balakrishnan R, Cherry JM,

Christie KR, Costanzo MC, Dwight SS, Engel S, Fisk DG, Hirschman JE, Hong EL,

Nash RS, Sethuraman A, Theesfeld CL, Botstein D, Dolinski K, Feierbach B,

Berardini T, Mundodi S, Rhee SY, Apweiler R, Barrell D, Camon E, Dimmer E, Lee

V, Chisholm R, Gaudet P, Kibbe W, Kishore R, Schwarz EM, Sternberg P, Gwinn M,

Hannick L, Wortman J, Berriman M, Wood V, de la Cruz N, Tonellato P, Jaiswal P,

Seigfried T, White R; Gene Ontology Consortium.

The Gene Ontology (GO) database and informatics resource.

Nucleic Acids Res. 2004 Jan 1;32(Database issue):D258-61.

PMID: 14681407 [PubMed - indexed for MEDLINE]


7952: Wain HM, Lush MJ, Ducluzeau F, Khodiyar VK, Povey S.

Genew: the Human Gene Nomenclature Database, 2004 updates.

Nucleic Acids Res. 2004 Jan 1;32(Database issue):D255-7.

PMID: 14681406 [PubMed - indexed for MEDLINE]


7953: Michalopoulos I, Torrance GM, Gilbert DR, Westhead DR.

TOPS: an enhanced database of protein structural topology.

Nucleic Acids Res. 2004 Jan 1;32(Database issue):D251-4.

PMID: 14681405 [PubMed - indexed for MEDLINE]


7954: Fleming K, Muller A, MacCallum RM, Sternberg MJ.

3D-GENOMICS: a database to compare structural and functional annotations of

proteins between sequenced genomes.

Nucleic Acids Res. 2004 Jan 1;32(Database issue):D245-50.

PMID: 14681404 [PubMed - indexed for MEDLINE]
7955: Ferre F, Ausiello G, Zanzoni A, Helmer-Citterich M.

SURFACE: a database of protein surface regions for functional annotation.

Nucleic Acids Res. 2004 Jan 1;32(Database issue):D240-4.

PMID: 14681403 [PubMed - indexed for MEDLINE]


7956: Madera M, Vogel C, Kummerfeld SK, Chothia C, Gough J.

The SUPERFAMILY database in 2004: additions and improvements.

Nucleic Acids Res. 2004 Jan 1;32(Database issue):D235-9.

PMID: 14681402 [PubMed - indexed for MEDLINE]


7957: Kopp J, Schwede T.

The SWISS-MODEL Repository of annotated three-dimensional protein structure

homology models.

Nucleic Acids Res. 2004 Jan 1;32(Database issue):D230-4.

PMID: 14681401 [PubMed - indexed for MEDLINE]
7958: Andreeva A, Howorth D, Brenner SE, Hubbard TJ, Chothia C, Murzin AG.

SCOP database in 2004: refinements integrate structure and sequence family

data.

Nucleic Acids Res. 2004 Jan 1;32(Database issue):D226-9.



PMID: 14681400 [PubMed - indexed for MEDLINE]
7959: Bourne PE, Addess KJ, Bluhm WF, Chen L, Deshpande N, Feng Z, Fleri W,

Green R, Merino-Ott JC, Townsend-Merino W, Weissig H, Westbrook J, Berman HM.

The distribution and query systems of the RCSB Protein Data Bank.

Nucleic Acids Res. 2004 Jan 1;32(Database issue):D223-5.

PMID: 14681399 [PubMed - indexed for MEDLINE]
7960: Pieper U, Eswar N, Braberg H, Madhusudhan MS, Davis FP, Stuart AC,

Mirkovic N, Rossi A, Marti-Renom MA, Fiser A, Webb B, Greenblatt D, Huang CC,

Ferrin TE, Sali A.

MODBASE, a database of annotated comparative protein structure models, and

associated resources.

Nucleic Acids Res. 2004 Jan 1;32(Database issue):D217-22.

PMID: 14681398 [PubMed - indexed for MEDLINE]
7961: Golovin A, Oldfield TJ, Tate JG, Velankar S, Barton GJ, Boutselakis H,

Dimitropoulos D, Fillon J, Hussain A, Ionides JM, John M, Keller PA, Krissinel

E, McNeil P, Naim A, Newman R, Pajon A, Pineda J, Rachedi A, Copeland J, Sitnov

A, Sobhany S, Suarez-Uruena A, Swaminathan GJ, Tagari M, Tromm S, Vranken W,

Henrick K.

E-MSD: an integrated data resource for bioinformatics.

Nucleic Acids Res. 2004 Jan 1;32(Database issue):D211-6.

PMID: 14681397 [PubMed - indexed for MEDLINE]


7962: Kaas Q, Ruiz M, Lefranc MP.

IMGT/3Dstructure-DB and IMGT/StructuralQuery, a database and a tool for

immunoglobulin, T cell receptor and MHC structural data.

Nucleic Acids Res. 2004 Jan 1;32(Database issue):D208-10.

PMID: 14681396 [PubMed - indexed for MEDLINE]
7963: Stebbings LA, Mizuguchi K.

HOMSTRAD: recent developments of the Homologous Protein Structure Alignment

Database.

Nucleic Acids Res. 2004 Jan 1;32(Database issue):D203-7.

PMID: 14681395 [PubMed - indexed for MEDLINE]
7964: Vinayagam A, Pugalenthi G, Rajesh R, Sowdhamini R.

DSDBASE: a consortium of native and modelled disulphide bonds in proteins.

Nucleic Acids Res. 2004 Jan 1;32(Database issue):D200-2.

PMID: 14681394 [PubMed - indexed for MEDLINE]


7965: McGuffin LJ, Street SA, Bryson K, Sorensen SA, Jones DT.

The Genomic Threading Database: a comprehensive resource for structural

annotations of the genomes from key organisms.

Nucleic Acids Res. 2004 Jan 1;32(Database issue):D196-9.

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