Acinetobacter



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Supplementary table 1- Chromosomes used in the analysis, their estimated optimal doubling time (d) in hours and their size (kb). Not all genes or chromosomes are present for all genomes. This is because some genes are absent from smaller replicons, or because the origin of replication could not be identified reliably (hence they were not used in the analysis), because some genes were not annotated, or finally because their orthology was not reliably assessed.














replicon

size

d

Reference

Acinetobacter ADP1

3598621

0,5

(Parke et al., 2001)

Agrobacterium tumefaciens C58 I

2841581

3

(Bell, 1990)

Agrobacterium tumefaciens C58 II

2074782

3

(Bell, 1990)

Azoarcus sp EbN1

4296230

4,3

(Chee-Sanford et al., 1996)

Bacillus cereus ATCC 14579

5411809

0,3

(Olmez and Aran, 2005)

Bacteroides fragilis


5277274

0,63

(Mangels et al., 1978)

Bacillus halodurans


4202352

0,6

(Sturr et al., 1994)

Bartonella henselae Houston-1

1931047

3

(Chenoweth et al., 2004)

Bacillus licheniformis ATCC14580

4222336

0,58

(van Dijk-Salkinoja and Planta, 1971)

Bartonella quintana Toulouse

1581384

3

(Huang, 1967)

Bacillus subtilis 168

4214630

0,43

(Yoshikawa et al., 1964)

Bacteroides thetaiotaomicron VPI-5482

6260361

1,47

(Anderson and Salyers, 1989)

Bdellovibrio bacteriovorus


3782950

1,4

(Pritchard et al., 1975)

Borrelia burgdorferi


910724

4

(De Silva and Fikrig, 1995)

Bordetella pertussis 12822

4086189

6

(Frohlich et al., 1995)

Brucella abortus biovar1 9-941 I

2124241

2

(Hoover and Friedlander, 2005)

Brucella abortus biovar1 9-941 II

1162204

2

(Hoover and Friedlander, 2005)

Bradyrhizobium japonicum USDA110

9105828

20

(Lopez-Garcia et al., 2001)

Brucella melitensis 16M I

2117144

2

(Gallot-Lavallee et al., 1995)

Brucella melitensis 16M II

1177787

2

(Gallot-Lavallee et al., 1995)

Brucella suis 1330 I

2107794

2

(Ekaza et al., 2000)

Brucella suis 1330 II

1207381

2

(Ekaza et al., 2000)

Buchnera aphidicola Sg

641454

36

(Baumann et al., 1995)

Burkholderia mallei ATCC23344

2325379

0,4

(Personal communication)

Burkholderia pseudomallei K96243 I

4074542

0,7

(Personal communication)

Burkholderia pseudomallei K96243 II

3173005

0,7

(Personal communication)

Candidatus Blochmannia floridanus


705557

36

(Holt, 1984)

Caulobacter crescentus


4016947

1,5

(Iba et al., 1977)

Campylobacter jejuni


1641481

1,5

(Rollins et al., 1983)

Chlamydophila abortus S26/3

1144377

24

(Holt, 1989)

Chlamydophila caviae GPIC

1173390

24

(Holt, 1989)

Chlamydia trachomatis M

1072950

24

(Holt, 1989)

Chlamydophyla pneumoniae A

1229853

24

(Holt, 1989)

Chlorobium tepidum TLS

2154946

2

(Frigaard et al., 2004)

Chlamydia trachomatis


1042519

24

(Holt, 1989)

Chromobacterium violaceum ATCC12472

4751080

0,8

(Bazylinski et al., 1986)

Clostridium acetobutylicum ATCC824

3940880

0,58

(Holt, 1986)

Clostridium perfringens 13

3031430

0,2

(Bryant and Stevens, 1997)

Coxiella burnetii RSA 493

1995275

8

(Heinzen et al., 1999)

Corynebacterium glutamicum


3282708

1,2

(Cocaign-Bousquet et al., 1996)

Dehalococcoides ethenogenes 195

1469720

19

(Maymo-Gatell et al., 1997)

Desulfotalea psychrophila


3523383

0,37

(Rabus et al., 2005)

Desulfovibrio vulgaris Hildenborough

3570858

14

(Pohorelic et al., 2002)

Enterococcus faecalis V583

3218031

0,5

(Sarantinopoulos et al., 2003)

Erwinia carotovora atroseptica SCRI1043

5064019

0,2

(Ding et al., 2001)

Escherichia coli MG1655

4639675

0,35

(Rubin, 1986)

Fusobacterium nucleatum


2174500

0,72

(Mangels et al., 1978)

Geobacter sulfurreducens PCA

3814139

6

(Cord-Ruwisch et al., 1998)

Gluconobacter oxydans 621H

2702173

1

(Bonomi et al., 1997)

Haemophilus ducreyi 35000HP

1698955

1,8

(Trees and Morse, 1995)

Haemophilus influenzae


1830138

0,5

(Rubin, 1986)

Helicobacter hepaticus ATCC51449

1799146

4,2

(Mehta et al., 2005)

Helicobacter pylori


1667867

2,4

(Vega et al., 2003)

Lactobacillus acidophilus NCFM

1993564

1,8

(Adamberg et al., 2003)

Lactobacillus johnsonii NCC533

1992676

0,9

(van der Kaaij et al., 2004)

Lactococcus lactis IL1403

2365589

0,7

(Andersen et al., 2001)

Lactobacillus plantarum WCFS1

3308274

1,6

(Barcena et al., 1998)

Leptospira interrogans lai 56601 I

4332241

9

(Shenberg, 1967)

Leptospira interrogans lai 56601 II

358943

9

(Shenberg, 1967)

Legionella pneumophila Philadelphia 1

3397754

3,3

(Saito et al., 1981)

Leifsonia xyli xyli CTCB07

2584158

5

(Turner et al., 1991)

Listeria innocua Clip11262

3011208

0,6

(Houtsma et al., 1996)

Listeria monocytogenes strain EGD

2944528

1

(Rubin, 1986)

Mycobacterium avium paratuberculosis k10

4829781

10

(Falkinham, 2003)

Mycoplasma gallisepticum R

996422

1

(Personal communication)

Mycoplasma genitalium


580074

12

(Peterson and Fraser, 2001)

Mycobacterium leprae


3268203

240

(Cole et al., 2001)

Mycoplasma pneumoniae


816394

6

(Peterson and Fraser, 2001)

Mycoplasma pulmonis UAB CTIP

963879

2

(Lartigue et al., 2003)

Mycobacterium tuberculosis


4411532

24

(Hiriyanna and Ramakrishnan, 1986)

Neisseria gonorrhoeae FA1090

2153922

1,1

(Morse and Hebeler, 1978)

Neisseria meningitidis A

2184406

1

(Takahashi et al., 2004)

Nitrosomonas europaea ATCC19718

2812094

18,5

(Holt, 1989)

Nocardia farcinica

6021225

3

(Heinzen and Ensign, 1975)

Pasteurella multocida PM70

2257487

1

(Xia et al., 2002)

Parachlamydia sp UWE25

2414465

48

(Greub et al., 2003)

Photorhabdus luminescens laumondii TTO1

5688987

0,5

(Personal communication)

Photobacterium profundum SS9 I

4085304

2,5

(Bidle and Bartlett, 1999)

Photobacterium profundum SS9 II

2237943

2,5

(Bidle and Bartlett, 1999)

Pirellula sp

7145576

10

(Rabus et al., 2002)

Porphyromonas gingivalis W83

2343476

2,7

(Marsh et al., 1994)

Propionibacterium acnes KPA171202

2560265

5,1

(Kunishima et al., 2001)

Prochlorococcus marinus CCMP1375

1751080

17

(Shalapyonok et al., 1998)

Pseudomonas aeruginosa PA01

6264403

0,5

(Rubin, 1986)

Pseudomonas putida KT2440

6181863

1,1

(Ahn et al., 1998)

Pseudomonas syringae tomato DC3000

6397126

1,47

(Keith et al., 1999)

Ralstonia solanacearum GMI1000

3716413

4

(Marangoni et al., 2001)

Rhodopseudomonas palustris


5459213

9

(Oda et al., 2004)

Rickettsia conorii Malish 7

1268755

4,1

(Oaks and Osterman, 1979)

Rickettsia prowazekii


1111523

10

(Pang and Winkler, 1994)

Rickettsia typhi wilmington

1111496

10

(Higgins et al., 1998)

Salmonella typhimurium LT2

4857432

0,4

(Rubin, 1986)

Shewanella oneidensis MR-1

4969803

0,66

(Abboud et al., 2005)

Sinorhizobium meliloti 1021

3654135

1,5

(Ampe et al., 2003)

Streptococcus agalactiae 2603VR

2160267

1,8

(Malin and Paoletti, 2001)

Staphylococcus aureus strain N315

2814816

0,4

(Somerville et al., 2003)

Streptomyces coelicolor A3(2)

8667507

2,2

(Shahab et al., 1996)

Staphylococcus epidermidis ATCC 12228

2499279

0,8

(Gottenbos et al., 2000)

Streptococcus mutans UA159

2030921

0,75

(Shimamoto et al., 1990)

Streptococcus pneumoniae TIGR4

2160837

0,5

(Small et al., 1986)

Streptococcus pyogenes M1

1852441

0,4

(Biswas et al., 2001)

Streptococcus thermophilus LMG18311

1796846

0,43

(O'Sullivan and Fitzgerald, 1999)

Symbiobacterium thermophilum


3566135

4,2

(Ohno et al., 1999)

Synechococcus sp WH8102

2434428

6

(Mori et al., 1996)

Thermotoga maritima


1860725

1,2

(Chhabra et al., 2002)

Thermoanaerobacter tengcongensis


2689445

1,1

(Xue et al., 2001)

Thermus thermophilus HB27

1894877

2,5

(Demirtas et al., 2003)

Treponema denticola ATCC35405

2843201

5

(Dollhopf et al., 2003)

Treponema pallidum


1138011

33

(Cox et al., 1990)

Ureaplasma urealyticum


751719

0,9

(Personal communication)

Vibrio cholerae I

2961149

0,2

(Holt, 1984)

Vibrio cholerae II

1072315

0,2

(Holt, 1984)

Vibrio fischeri ES114 I

2906179

0,3

(McFall-Ngai, 2000)

Vibrio fischeri ES114 II

1332022

0,3

(McFall-Ngai, 2000)

Vibrio parahaemolyticus I

3288558

0,2

(Twedt and Novelli, 1971)

Vibrio parahaemolyticus II

1877212

0,2

(Twedt and Novelli, 1971)

Vibrio vulnificus CMCP6 I

3281945

0,16

(Holt, 1984)

Vibrio vulnificus CMCP6 II

1844853

0,16

(Holt, 1984)

Wolbachia endosymbiont TRS Brugia malayi

1080084

14

(Fenollar et al., 2003)

Wolinella succinogenes


2110355

1

(Ullmann et al., 2000)

Xanthomonas axonopodis


5175554

7

(Wichmann et al., 2005)

Xanthomonas campestris


5076188

3

(Pena et al., 2002)

Xanthomonas oryzae oryzae KACC10331

4941439

2

(Ehrlich et al., 1977)

Xylella fastidiosa 9a5c

2679306

96

(Leite et al., 2004)

Yersinia pestis CO92

4653728

1,25

(Chu, 2001)

Yersinia pseudotuberculosis


4744671

0,5

(Dreyfus and Brubaker, 1978)



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