Automated identification of single nucleotide polymorphisms from sequencing data
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- A Kohonen self-organizing map for the functional classification of proteins based on one-dimensional sequence information
- A framework towards efficient and effective sequence clustering
- Phylogenetic tree reconstruction using self-adaptive genetic algorithm
- Sequence comparison using a relational database approach
- Machine learning approaches to gene recognition
- Implementation of a parallel processing system for inference of phylogenetic trees
- A comparative study of genetic sequence classification algorithms
- A neural-fuzzy system for the protein folding problem
- Using fuzzy logic and a hybrid genetic algorithm for metabolic modeling
- Simulation of the human glucose metabolism using fuzzy arithmetic
- A deformable template model based on fuzzy alignment algorithm
| Automated identification of single nucleotide polymorphisms from sequencing data
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Protein modeling using hidden Markov models: analysis of globins Haussler, D.; Krogh, A.; Mian, I.S.; Sjolander, K. System Sciences, 1993, Proceeding of the Twenty-Sixth Hawaii International Conference on , 1993 Page(s): 792 -802 vol.1 00375338.pdf Parameterization studies of hidden Markov models representing highly divergent protein sequences McClure, M.A.; Raman, R. System Sciences, 1995. Vol.1 Proceedings of the Twenty-Eighth Hawaii International Conference on , 1995 Page(s): 184 -194 vol.5 00810222.pdf Application of hidden Markov models to gene prediction in DNA Yin, M.M.; Wang, J.T.L. Information Intelligence and Systems, 1999. Proceedings. 1999 International Conference on , 1999 Page(s): 40 –47 00684438.pdf Statistical Analysis Of DNA strructure Based On Markov Chains Kleffe, J. Engineering in Medicine and Biology Society, 1991. Vol.13: 1991., Proceedings of the Annual International Conference of the IEEE , 1991 Page(s): 1253 –1254 Dimitris Anastassiou D. Anastassiou, "Frequency-Domain analysis of Biomolecular Sequences," Bioinformatics, vol. 16, no.12, December 2000, pp. 1073-1081. D. Anastassiou, "Genomic Signal Processing", IEEE Signal Processing Magazine, magazine theme article, July 2001. D. Anastassiou, "DSP in Genomics", Proceedings, IEEE International conference ICASSP 2001, Salt Lake City, Utah, May 2001. D. Anastassiou, "Digital Signal Processing of Biomolecular Sequences", Technical Report EE000420-1, April 2000. 01188714.pdf The hardware implementation of a genetic algortihm model with FPGA Tu Lei; Ming-cheng Zhu; Jing-xia Wang; Field-Programmable Technology, 2002. (FPT). Proceedings. 2002 IEEE International Conference on , 2002 Page(s): 374 -377 00813435.pdf FPGA implementation of four-step genetic search algorithm So, M.F.; Wu, A.; Electronics, Circuits and Systems, 1999. Proceedings of ICECS '99. The 6th IEEE International Conference on , Volume: 2 , 5-8 Sep 1999 Page(s): 1143 -1146 vol.2 00952370.pdf Genetic programming in FPGA implementation of addition as a part of the convolution Jamro, E.; Wiatr, K.; Digital Systems, Design, 2001. Proceedings. Euromicro Symposium on , 2001 Page(s): 466 -473 01017396.pdf A hydrophobicity based neural network method for predicting transmembrane segments in protein sequences Zhongqiang Chen; Qi Liu; Yisheng Zhu; Yixue Li; Yuhong Xu; Engineering in Medicine and Biology Society, 2001. Proceedings of the 23rd Annual International Conference of the IEEE , Volume: 3 , 2001 Page(s): 2899 -2902
A Kohonen self-organizing map for the functional classification of proteins based on one-dimensional sequence information Pollock, R.; Lane, T.; Watts, M.; Neural Networks, 2002. IJCNN '02. Proceedings of the 2002 International Joint Conference on , Volume: 1 , 2002 Page(s): 189 -192 00183932.pdf Bayesian classification of protein structural elements Hunter, L.; States, D.J.; System Sciences, 1991. Proceedings of the Twenty-Fourth Annual Hawaii International Conference on , Volume: i ,8-11 Jan 1991 Page(s): 595 -604 vol.1 00323570.pdf A protein family classification method for analysis of large DNA sequences Henikoff, S.; Henikoff, J.G.; System Sciences, 1994. Vol.V: Biotechnology Computing, Proceedings of the Twenty-Seventh Hawaii International Conference on , 4-7 Jan 1994 Page(s): 265 -274 00565047.pdf Protein structure classification by structural transformation Ohkawa, T.; Namihira, D.; Komoda, N.; Kidera, A.; Nakamura, H.; Intelligence and Systems, 1996., IEEE International Joint Symposia on , 4-5 Nov 1996 Page(s): 23 -29 00934277.pdf Classification and function estimation of protein by using data compression and genetic algorithms Chiba, S.; Sugawara, K.; Watanabe, T.; Evolutionary Computation, 2001. Proceedings of the 2001 Congress on , Volume: 2 , 2001 @techreport{ krogh93hidden, author = "Anders Krogh and Michael Brown and I. Saira Mian and Kimmen Sjolander and David Haussler", title = "{HIDDEN} {MARKOV} {MODELS} {IN} {COMPUTATIONAL} {BIOLOGY}: {APPLICATIONS} {TO} {PROTEIN} {MODELING}", number = "UCSC-CRL-93-32", year = "1993", url = "citeseer.nj.nec.com/krogh93hidden.html" } 05/12/02 @techreport{ krogh94hidden, author = "Anders Krogh and I. Saira Mian and David Haussler", title = "A {HIDDEN} {MARKOV} {MODEL} {THAT} {FINDS} {GENES} {IN} {E}. {COLI} {DNA}", number = "UCSC-CRL-93-33", year = "1994", url = "citeseer.nj.nec.com/article/krogh94hidden.html" } 05/12/02 @article{ hughey96hidden, author = "R. Hughey and A. Krogh", title = "Hidden Markov models for sequence analysis: extension and analysis of basic method.", journal = "Comp. Appl. BioSci", volume = "12", number = "2", pages = "95--108", year = "1996", url = "citeseer.nj.nec.com/richard96hidden.html" } 05/12/02 @misc{ grundy97metameme, author = "W. Grundy and T. Bailey and C. Elkan and M. Baker", title = "MetaMEME: Motif-based hidden Markov models of protein families", text = "Grundy, W. N., T. L. Bailey, C. P. Elkan and M. E. Baker. MetaMEME: Motif-based hidden Markov models of protein families. CABIOS, 1997. To appear. Grundy, W. N., T. L. Bailey, C. P. Elkan and M. E. Baker. Hidden Markov model analysis of motifs in steroid dehydrogenases and their homologs. BBRC, 231(3):760-766, 1997.", year = "1997", url = "citeseer.nj.nec.com/grundy97metameme.html" } 05/12/02 @misc{ grundy-hidden, author = "William N Grundy and Timothy L Bailey and Charles P Elkan and Michael E Baker",
title = "Hidden Markov Model Analysis of Motifs in Steroid Dehydrogenases and their Homologs", url = "citeseer.nj.nec.com/grundy97hidden.html" } 05/12/02
@misc{ karplus98hidden, author = "K. Karplus and C. Barrett and R. Hughey", title = "Hidden markov models for detecting remote protein homologies", text = "Kevin Karplus, Christian Barrett, and Richard Hughey. Hidden markov models for detecting remote protein homologies. Bioinformatics, 14(10):846--856, 1998.", year = "1998", url = "citeseer.nj.nec.com/article/karplus99hidden.html" } 05/12/02 @inproceedings{ haussler93protein, author = "David Haussler and Andrews Krogh and I. Saira Mian and Kimmen Sjolander", title = "Protein Modeling using Hidden {M}arkov Models: Analysis of Globins", booktitle = "Proceedings of the 26th Hawaii International Conference on System Sciences", publisher = "IEEE Computer Society Press", address = "Honolulu", pages = "792--802", year = "1993", 01188714.pdf The hardware implementation of a genetic algortihm model with FPGA Tu Lei; Ming-cheng Zhu; Jing-xia Wang; Field-Programmable Technology, 2002. (FPT). Proceedings. 2002 IEEE International Conference on , 2002 Page(s): 374 -377 00813435.pdf FPGA implementation of four-step genetic search algorithm So, M.F.; Wu, A.; Electronics, Circuits and Systems, 1999. Proceedings of ICECS '99. The 6th IEEE International Conference on , Volume: 2 , 5-8 Sep 1999 Page(s): 1143 -1146 vol.2 00952370.pdf Genetic programming in FPGA implementation of addition as a part of the convolution Jamro, E.; Wiatr, K.; Digital Systems, Design, 2001. Proceedings. Euromicro Symposium on , 2001 Page(s): 466 -473 Download 42.45 Kb. Share with your friends:
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