Computational Chemistry Data Dictionary energy



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Computational Chemistry Data Dictionary

energy – the ability to do work; in the context of molecules it represents the stability of a molecular structure (typically in kcal/mol or kJ/mol)

potential energy surface (PES) – a mathematical function that gives the energy of a molecular complex as a function of the coordinates of all atomic nuclei

zero-point energy (ZPE) – the lowest possible energy that a quantum mechanical system may have

van der Waals (vdW) complex – a weakly bound molecular complex of atoms and molecules held together by intermolecular attractions such as van der Waals forces and/or hydrogen bonds

stationary state – an unvarying structure in a molecular reaction scheme that is stabilized energetically

transition state – state corresponding to the highest energy along the reaction coordinate

rate constant – is the proportionality constant that quantifies the rate of a chemical reaction (which is equal to the product of the rate constant and the concentrations of all reactants). For unimolecular reactions it has units of s-1, bimolecular reactions it has units of cm3∙molecules-1∙s-1 or M-1∙s-1, trimolecular reactions it has units of cm6∙molecules-2∙s-1 or M-2∙s-1, etc.

density functional theory (DFT) – a computational quantum mechanical modelling method used in chemistry to investigate the electronic structure of many-body systems (atoms, molecules, molecular complexes)

nudged elastic band (NEB) – a method for finding stationary and transition states between reactants and products. The method optimizes a number of intermediate images along the reaction path.

image number – label for the image in a reaction path being optimized by the NEB method

M06 density functional – one of the popular approximate exchange-correlation energy functionals in DFT (Minnesota Functionals – Myz) used to optimize molecular structures and quantify energies

basis sets – in computational chemistry this represents a set of functions that are used to represent the electronic wave function used in DFT or other quantum chemistry methods. Popular basis sets include the Pople (i.e. 6-311++G**) and Dunning (i.e. aug-cc-pVTZ) basis sets.

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