Pdb related Links The Protein Data Bank

http://www.pdb.org

“Protein Structures: From Famine to Feast”, Berman, et.al.

American Scientist v.90, p.350-359, July-August 2002

http://www.sdsc.edu/pb/papers/amer_sci.pdf

http://www.expasy.org/spdbv/

On Athena computer, type in a prompt terminal:

athena% add deepview

athena% spdbv &

http://web.mit.edu/acs/www/simulation.html#Deep
Pymol on Athena:

On Athena computer, type in a prompt terminal:

athena% add pymol

athena% pymol

http://web.mit.edu/acs/www/simulation.html#pymol
VMD on Athena:

On Athena computer, type in a prompt terminal:

athena% add vmd

athena% vmd

http://web.mit.edu/acs/www/simulation.html#VMD

Rasmol on Athena:

On Athena computer, type in a prompt terminal:

athena% add rasmol

athena% rasmol -format description_file

http://web.mit.edu/acs/www/simulation.html#rasmol

Molekel on Athena:

On Athena computer, type in a prompt terminal:

athena% add molekel

athena% molekel

http://web.mit.edu/acs/www/simulation.html#molekel

Other Free Visualization Programs (free for academic use):

PyMol: http://pymol.sourceforge.net/

Chimera: http://www.cgl.ucsf.edu/chimera/

VMD: http://www.ks.uiuc.edu/Research/vmd/

MolMol: http://hugin.ethz.ch/wuthrich/software/molmol/index.html

Cn3D: http://www.ncbi.nlm.nih.gov/Structure/CN3D/cn3d.shtml

iMol: http://www.pirx.com/iMol/

JMV: http://www.frontiernet.net/~imaging/molecular_modeling.html

Molview: http://www.danforthcenter.org/smith/MolView/molview.html

RasMol: http://www.bernstein-plus-sons.com/software/rasmol/