Table list of genes found to be horizontally transferred between clades



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PAN002148

core




GTP cyclohydrolase I

PAN002161

core




Sugar kinases, ribokinase family

PAN002174

core




ABC-type uncharacterized transport system, permease component

PAN002179

core




16S rRNA uridine-516 pseudouridylate synthase and related pseudouridylate synthases

PAN002193

core




ABC-type transport system involved in cytochrome c biogenesis, permease component

PAN002198

core




Ferredoxin

PAN002199&

core




Anaerobic dehydrogenases, typically selenocysteine-containing

PAN002201

core




Ferredoxin

PAN002207

core




Alkylated DNA repair protein

PAN002208

core




Adenosine deaminase

PAN002210

core




Outer membrane protein (porin)

PAN002246

core




Predicted pyridoxal phosphate-dependent enzyme apparently involved in regulation of cell wall biogenesis

PAN002271

core




NADH:ubiquinone oxidoreductase subunit 1 (chain H)

PAN002285

core




Acetate kinase

PAN002298

core




ABC-type amino acid transport/signal transduction systems, periplasmic component/domain

PAN002328

core




Phosphohistidine phosphatase SixA

PAN002356

core




Response regulator of the LytR/AlgR family

PAN002399

core




-

PAN002436*

core

113

Uncharacterized lipoprotein

PAN002445

core




Uracil phosphoribosyltransferase

PAN002461

core




FOG: WD40-like repeat

PAN002464

core




Enzyme involved in the deoxyxylulose pathway of isoprenoid biosynthesis

PAN002476

core




DnaJ-domain-containing proteins 1

PAN002499*

core

16

Nitrogen regulatory protein PII

PAN002557

core




Putative Mg2+ and Co2+ transporter CorB

PAN002561

core




Small protein A (tmRNA-binding)

PAN002583

core




Protein involved in ribonucleotide reduction

PAN002588

core




ABC-type proline/glycine betaine transport system, permease component

PAN002615*

core

22

Uncharacterized NAD(FAD)-dependent dehydrogenases

PAN002629

core




Formate hydrogenlyase subunit 4

PAN002670

core




Predicted acid phosphatase

PAN002672

core




2C-methyl-D-erythritol 2,4-cyclodiphosphate synthase

PAN002711*

core

75

Signal transduction histidine kinase

PAN002779

core




Prolipoprotein diacylglyceryltransferase

PAN002787

core




Acyl-CoA synthetases (AMP-forming)/AMP-acid ligases II

PAN002877

core




Endonuclease I

PAN002880*

core

466

Putative transcriptional regulator

PAN002881*

core

50


Predicted endonuclease involved in recombination (possible Holliday junction resolvase in Mycoplasmas and B. subtilis)

PAN002886

core




Xanthosine triphosphate pyrophosphatase

PAN003014*

core

274

Zn finger protein HypA/HybF (possibly regulating hydrogenase expression)

PAN003016

core




Ni,Fe-hydrogenase maturation factor

PAN003097*

core

32

Predicted transcriptional regulators

PAN003135*

core

14

Predicted membrane protein

PAN003160

core




Phosphotransferase system, mannose/fructose/N-acetylgalactosamine-specific component IIC

PAN003179

core




Predicted endonuclease containing a URI domain

PAN003215*

core

304


ABC-type transport system involved in resistance to organic solvents, auxiliary component

PAN003224

core




Uncharacterized protein conserved in bacteria

PAN003245

core




Glutathione S-transferase

PAN003249

core




Predicted ATPase

PAN003252

core




Trypsin-like serine proteases, typically periplasmic, contain C-terminal PDZ domain

PAN003270

core




FOG: EAL domain

PAN003291

core




Transcriptional regulator

PAN003322

core




Preprotein translocase subunit SecY

PAN003388

core




NAD(P)H-nitrite reductase

PAN003402

core




Predicted phosphatases

PAN003417

core




Disulfide bond chaperones of the HSP33 family

PAN003430*

core

23

Thioredoxin-like proteins and domains

PAN003457

core




Aspartate-semialdehyde dehydrogenase

PAN003471

core




-

PAN003488

core




N6-adenine-specific methylase

PAN003497

core




-

PAN003501

core




ABC-type dipeptide transport system, periplasmic component

PAN003502

core




ABC-type dipeptide/oligopeptide/nickel transport systems, permease components

PAN003507*

core

9

ABC-type multidrug transport system, permease component

PAN003519

core




Protein involved in catabolism of external DNA

PAN003539

core




Uncharacterized conserved protein

PAN003618*

core

228

Glutathione S-transferase

PAN003670

core




Guanylate kinase

PAN003811

core




Molecular chaperone (small heat shock protein)

PAN003835

core




Phosphopantetheinyl transferase

PAN003849*

core

45

ABC-type phosphate transport system, permease component

PAN003854

core




F0F1-type ATP synthase, beta subunit

PAN003926

core




Uncharacterized protein, possibly involved in aromatic compounds catabolism

PAN003951

core




Dienelactone hydrolase and related enzymes

PAN003952

core




Uridine phosphorylase

PAN003975

core




Flavodoxin

PAN003976*

core

7

Molybdopterin-guanine dinucleotide biosynthesis protein

PAN003990*

core

132

Signal transduction histidine kinase, nitrogen specific

PAN003991*

core

70

Glutamine synthetase

PAN004005

core




Predicted membrane protein

PAN004047

core




1,4-dihydroxy-2-naphthoate octaprenyltransferase

PAN004049

core





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