2016 ifas refereed Journal Publications



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Journal of the Science of Food and Agriculture, doi: 10.1002/jsfa.7902.

Mutunga, J., Chen, Q., Wong, D., Lam, P., Li, J., Totrov, M. M., Gross, A. D., Carlier, P. R., & Bloomquist, J. R. (2016). Bivalent carbamates as novel control agents of the malaria mosquito, Anopheles gambiae. Chimia, 70(10), 704-708.

Muwamba, A., Nkedi-Kizza, P., & Morgan, K. T. (2016). Determination of Sorption Coefficient of Phosphorus Applied for Sugarcane Production in Southwestern Florida. Journal of Environmental Quality, 45(5), 1760-1768.

Na, C. I., Fedenko, J. R., Sollenberger, L. E., & Erickson, J. E. (2016). Harvest management affects biomass composition responses of C4 perennial bioenergy grasses in the humid subtropical USA. Global Change Biology Bioenergy, 8(6), 1150-1161.

Na, C. I., Sollenberger, L. E., Fedenko, J. R., Erickson, J. E., & Woodard, K. R. (2016). Seasonal changes in chemical composition and leaf proportion of elephantgrass and energycane biomass. Industrial Crops and Products, 94, 107-116.

Nairn, B. L., Lonergan, Z. R., Wang, J. F., Braymer, J. J., Zhang, Y. F., Calcutt, M. W., Lisher, J. P., Gilston, B. A., Chazin, W. J., de Crecy-Lagard, V., Giedroc, D. P., & Skaar, E. P. (2016). The Response of Acinetobacter baumannii to Zinc Starvation. Cell Host & Microbe, 19(6), 826-836.

Nanduri, B., Shack, L. A., Rai, A. N., Epperson, W. B., Baumgartner, W., Schmidt, T. B., & Edelmann, M. J. (2016). Use of focused ultrasonication in activity-based profiling of deubiquitinating enzymes in tissue. Analytical Biochemistry, 515, 9-13.

Naserian, A. A., Staples, C. R., & Ghaffari, M. H. (2016). Effects of replacing wheat bran by pistachio skins on feed intake, nutrient digestibility, milk yield, milk composition and blood metabolites of dairy Saanen goats. Journal of Animal Physiology and Animal Nutrition, 100(2), 256-263.

Nazarian, A., & Gezan, S. A. (2016). GenoMatrix: A Software Package for Pedigree-Based and Genomic Prediction Analyses on Complex Traits. Journal of Heredity, 107(4), 372-379.

Nehela, Y., Hijaz, F., Elzaawely, A. A., El-Zahaby, H. M., & Killiny, N. (2016). Phytohormone profiling of the sweet orange (Citrus sinensis (L.) Osbeck) leaves and roots using GC-MS-based method. Journal of Plant Physiology, 199, 12-17.

Nell, L. A., Frederick, P. C., Mazzotti, F. J., Vliet, K. A., & Brandt, L. A. (2016). Presence of breeding birds improves body condition for a crocodilian nest protector. PLoS ONE, 11(3), e0149572.

Nelson, C. D., Lippolis, J. D., Reinhardt, T. A., Sacco, R. E., Powell, J. L., Drewnoski, M. E., O'Neil, M., Beitz, D. C., & Weiss, W. P. (2016). Vitamin D status of dairy cattle: Outcomes of current practices in the dairy industry. Journal of Dairy Science, 99(12), 10150-10160.

Nelson, C. D., Powell, J. L., Price, D. M., Hersom, M. J., Yelich, J. V., Drewnoski, M. E., Bird, S. L., & Bridges, G. A. (2016). Assessment of serum 25-hydroxyvitamin D concentrations of beef cows and calves across seasons and geographical locations. Journal of Animal Science, 94(9), 3958-3965.

Nermut, J., Puza, V., Mekete, T., &, Mracek, Z. (2016). Phasmarhabditis bonaquaense n. sp. (Nematoda: Rhabditidae), a new slug-parasitic nematode from the Czech Republic. Zootaxa, 4179(3), 530-546.

Nettleman, C. A., Abd-Elrahman, A., Adams, D., Fik, T., Ruppert, T., Barnes, G., & Dewitt, B. (2016). A GIS based model of rolling easement policies in Pinellas County and Sarasota County, Florida. Ocean & Coastal Management, 132, 143-154.

Newberry, E. A., Jardini, T. M., Rubio, I., Roberts, P. D., Babu, B., Koike, S. T., Bouzar, H., Goss, E. M., Jones, J. B., Bull, C. T., & Paret, M. L. (2016). Angular Leaf Spot of Cucurbits is Associated with Genetically Diverse Pseudomonas syringae Strains. Plant Disease, 100(7), 1397-1404.

Newberry, E. A., Paret, M. L., Jones, J. B., & Bost, S. C. (2016). First Report of Leaf Spot of Pumpkin Caused by Pseudomonas cichorii in Tennessee. Plant Disease, 100(10), 2159-2160.

Newton, I., McGrady, M., & Oli, M. (2016). A review of survival estimates for raptors and owls. Ibis, 158, 227-248.

Nguyen, T. T. N., Migliaccio, K. W., Evans, E. A., Martinez, C. J., Sansalone, J. J., & Clark, M. W. (2016). Coupling hydrologic and economic modeling for wetland management multi-optimization in Tram Chim National Park, Vietnam. Journal of Environmental Planning and Management, 60(5), 842-861.

Ni, Z., Burks, T. F., & Lee, W. S. (2016). 3D reconstruction of plant/tree canopy using monocular and binocular vision. Journal of Imaging, 2(4), 14.

Nicholson, W. L., Davis, C. L., Shapiro, N., Huntemann, M., Clum, A., Reddy, T. B. K., Pillay, M., Markowitz, V., Varghese, N., Pati, A., Ivanova, N., Kyrpides, N., & Woyke, T. (2016). An improved high-quality draft genome sequence of Carnobacterium inhibens subsp inhibens strain K1(T). Standards in Genomic Sciences, 11, Article 65.

Nifong, J. C. (2016). Living on the edge: Trophic ecology of Alligator mississippiensis Daudin 1801 (American alligator) with access to a shallow estuarine impoundment. Bulletin of the Florida Museum of Natural History, 54(2), 13-49.

Nifong, J. C., Frazer, T., & Mojica, C. (2016). Alligator mississippiensis (DIET). Herpetological Review, 47(1), 130-131.

Noppibool, U., Koonawootrittriron, S., Elzo, M. A., & Suwanasopee, T. (2016). Estimation of genetic parameters and trends for length of productive life and lifetime production traits in a commercial Landrace and Yorkshire swine population in Northern Thailand. Asian-Australasian Journal of Animal Sciences, 29(9), 1222-1228.

Noppibool, U., Koonawootrittriron, S., Elzo, M. A., & Suwanasopee, T. (2016). Factors affecting length of productive life and lifetime production traits of commercial sows in Northern Thailand. Agriculture and Natural Resources, 50(1), 71-74.

Noppibool, U., Koonawootrittriron, S., Elzo, M. A., & Suwanasopee, T. (2016). Genetic Relationships between Length of Productive Life and Lifetime Production Efficiency in a Commercial Swine Herd in Northern Thailand. Animal Science Journal, 88, 213-221.

Nunez, G. H., Harmon, C. L., Olmstead, J. W., & Darnell, R. L. (2016). Root-level inoculation with iron-reducing microorganisms does not enhance iron uptake by southern highbush blueberry plants. Rhizosphere, 2, 24-33.

Nunez, G. H., Rodríguez-Armenta, H. P., Darnell, R. L., & Olmstead, J. W. (2016). Toward Marker-assisted Breeding for Root Architecture Traits in Southern Highbush Blueberry. Journal of the American Society for Horticultural Science, 141(5), 414-424.

Nunez, G., Kovaleski, A. P., Casamali, B., & Darnell, R. L. (2016). Can science and genetics literacy affect student perception of genetically modified organisms? AgBioForum, 19(1), 44-53.

O’Neill, B., Gillen, M., & Hunter, J. (2016). Evidence-based evaluation tools for Small Steps to Health and Wealth. The Forum for Family and Consumer Issues, 21(2).

Obase, K., Douhan, G. W., Matsuda, Y., & Smith, M. E. (2016). Revisiting phylogenetic diversity and cryptic species of Cenococcum geophilum sensu lato. Mycorrhiza, 26(6), 529-540.

Odero, D. C., Duchrow, M., & Havranek, N. (2016). Critical Timing of Fall Panicum (Panicum dichotomiflorum) Removal in Sugarcane. Weed Technology, 30(1), 13-20.

Odero, D. C., Fernandez, J. V., & Havranek, N. (2016). Weed Control and Radish (Raphanus sativus) Response to S-metolachlor on Organic Soils. Hortscience, 51(1), 79-83.

O'Donnell, K., Libeskind-Hadas, R., Hulcr, J., Bateman, C., Kasson, M. T., Ploetz, R. C., Konkol, J. L., Ploetz, J. N., Carrillo, D., Campbell, A., Duncan, R. E., Liyanage, P. N. H., Eskalen, A., Lynch, S. C., Geiser, D. M., Freeman, S., Mendel, Z., Sharon, M., Aoki, T., Cosse, A. A., & Rooney, A. P. (2016). Invasive Asian Fusarium - Euwallacea ambrosia beetle mutualists pose a serious threat to forests, urban landscapes and the avocado industry. Phytoparasitica, 44(4), 435-442.

Oglend, A., & Asche, F. (2016). Cyclical non-stationarity in commodity prices. Empirical Economics, 51(4), 1465-1479.

Ogunade, I. M., Arriola, K. G., Jiang, Y., Driver, J. P., Staples, C. R., & Adesogan, A. T. (2016). Effects of 3 sequestering agents on milk aflatoxin M1 concentration and the performance and immune status of dairy cows fed diets artificially contaminated with aflatoxin B1. Journal of Dairy Science, 99(8), 6263-6273.

Ogunade, I. M., Jiang, Y., Kim, D. H., Cervantes, A. A., Arriola, K. G., Vyas, D., Weinberg, Z. G., Jeong, K. C., & Adesogan, A. T. (2016). Fate of Escherichia coli O157:H7 and bacterial diversity in corn silage contaminated with the pathogen and treated with chemical or microbial additives. Journal of Dairy Science, 100(3), 1780-1794.

Ogunade, I. M., Kim, D. H., Jiang, Y., Weinberg, Z. G., Jeong, K. C., & Adesogan, A. T. (2016). Control of Escherichia coli O157:H7 in contaminated alfalfa silage: Effects of silage additives. Journal of Dairy Science, 99(6), 4427-4436.

Okonechnikov, K., Conesa, A., & Garcia-Alcalde, F. (2016). Qualimap 2: advanced multi-sample quality control for high-throughput sequencing data. Bioinformatics, 32(2), 292-294.

Olexa, M. T. (2016). Anonymous Grading: A Win/Win for Faculty and Students. NACTA Journal, 60(2), 259.

Orihara, T., Lebel, T., Ge, Z.-W., Smith, M. E., & Maekawa, N. (2016). Evolutionary history of the sequestrate genus Rossbeevera (Boletaceae) reveals a new genus Turmalinea and highlights the utility of ITS minisatellite-like insertions for molecular identification. Persoonia, 37, 173-198.

Orsborne, J., Banks, S. D., Hendy, A., Gezan, S. A., Kaur, H., Wilder-Smith, A., Lindsay, S. W., & Logan, J. G. (2016). Personal Protection of Permethrin-Treated Clothing against Aedes aegypti, the Vector of Dengue and Zika Virus, in the Laboratory. PLoS ONE, 11(5), e0152805.

Ortega, M. S., Denicol, A. C., Cole, J. B., Null, D. J., & Hansen, P. J. (2016). Use of single nucleotide polymorphisms in candidate genes associated with daughter pregnancy rate for prediction of genetic merit for reproduction in Holstein cows. Animal Genetics, 47(3), 288-297.

Ortega, M. S., Rocha-Frigoni, N. A., Mingoti, G. Z., Roth, Z., & Hansen, P. J. (2016). Modification of embryonic resistance to heat shock in cattle by melatonin and genetic variation in HSPA1L. Journal of Dairy Science, 99(11), 9152-9164.

Ortiz-Urquiza, A., Fan, Y. H., Garrett, T., & Keyhani, N. O. (2016). Growth substrates and caleosin-mediated functions affect conidial virulence in the insect pathogenic fungus Beauveria bassiana. Microbiology-Sgm, 162(11), 1913-1921.

Ostry, M. E., Moore, M., Jacobs, J., Smith, J. A., & Anderson, N. (2016). Disease biology and histopathology of bronze leaf disease: a threat to cultivated aspens, white poplars and their hybrids. Forest Pathology, 47, 1, e12293.

Ou, M. S., Awasthi, D., Nieves, I., Wang, L., Erickson, J., Vermerris, W., Ingram, L. O., & Shanmugam, K. T. (2016). Sweet Sorghum Juice and Bagasse as Feedstocks for the Production of Optically Pure Lactic Acid by Native and Engineered Bacillus coagulans Strains. Bioenergy Research, 9(1), 123-131.

Overholt, W. A., Rayamajhi, M., Rohrig, E., Hight, S., Dray, F. A., Lake, E., Smith, M., Hibbard, K., Bhattarai, G. P., Bowers, K., Poffenberger, R., Clark, M., Curry, B., Stange, B., Calise, E., Wasylik,, & T., M., C., & Leidi, J. (2016). Release and distribution of Lilioceris cheni (Coleoptera: Chrysomelidae), a biological control agent of air potato (Dioscorea bulbifera: Dioscoreaceae), in Florida. Biocontrol Science and Technology, 26(8), 1087-1099.

Owens, C. T., & Lamm, A. J. (2016). Exploring the Relationship between Critical Thinking Style and Water Conservation Behavior: Implications for Extension. Journal of Agricultural Education, 57(4), 119-130.

Owens, D., Nuessly, G. S., Seal, D. R., & Colquhoun, T. A. (2016). Variable Pyrethroid Susceptibility Among the Sweet Corn-Infesting Ulidiidae (Diptera) in Florida and New Baseline Susceptibilities. Journal of Economic Entomology, 109(3), 1283-1288.

Owens, N., Carter, S. K., Nordham, C. J., & Ford, J. A. (2016). Neutralizing the Maternal Breast Accounts of Public Breastfeeding by African American Mothers. Journal of Family Issues, doi: 10.1177/0192513X16650229.

Ozawa, M., Sakatani, M., Dobbs, K. B., Kannampuzha-Francis, J., & Hansen, P. J. (2016). Regulation of gene expression in the bovine blastocyst by colony stimulating factor 2. BMC Res Notes, 9, 250. doi:10.1186/s13104-016-2038-y

Pacholewicz, E., Barus, A. S., Swart, A., Havelaar, A. H., Lipman, L. J. A., & Luning, P. A. (2016). Influence of food handlers' compliance with procedures of poultry carcasses contamination: A case study concerning evisceration in broiler slaughterhouses. Food Control, 68, 367-378.

Pacholewicz, E., Lipman, L. J., Swart, A., Havelaar, A. H., & Heemskerk, W. J. (2016). Pre-scald brushing for removal of solids and associated broiler carcass bacterial contamination. Poultry Science, 95(12), 2979-2985.

Pacholewicz, E., Swart, A., Wagenaar, J., Lipman, L. J., & Havelaar, A. H. (2016). Explanatory Variables Associated with Campylobacter and Escherichia coli Concentrations on Broiler Chicken Carcasses during Processing in Two Slaughterhouses. Journal of Food Protection, 79(12), 2038-2047.

Padowski, J. C., Carrera, L., & Jawitz, J. W. (2016). Overcoming Urban Water Insecurity with Infrastructure and Institutions. Water Resources Management, 30(13), 4913-4926.

Padua, J. M. V., Dias, K. O. D., Pastina, M. M., de Souza, J. C., Queiroz, V. A. V., da Costa, R. V., da Silva, M. B. P., Ribeiro, C. A. G., Guimaraes, C. T., Gezan, S. A., & Guimaraes, L. J. M. (2016). A multi-environment trials diallel analysis provides insights on the inheritance of fumonisin contamination resistance in tropical maize. Euphytica, 211(3), 277-285.

Pan, H., Xu, L., Noland, J. E., Li, H., Siegfried, B. D., & Zhou, X. (2016). Assessment of potential risks of dietary RNAi to a soil micro-arthropod, Sinella curviseta Brook (Collembola: Entomobryidae). Front. Plant Sci., 7, doi:/10.3389/fpls.2016.01028.

Pan, L., Zhang, X. Q., Wang, J. P., Ma, X., Zhou, M. L., Huang, L. K., Nie, G., Wang, P. X., Yang, Z. F., & Li, J. (2016). Transcriptional Profiles of Drought-Related Genes in Modulating Metabolic Processes and Antioxidant Defenses in Lolium multiflorum. Frontiers in Plant Science, 7, doi:10.3389/fpls.2016.00519

Pang, S., Zhang, S. H., Lv, X. Y., Han, B., Liu, K. H., Qiu, C. H., Wang, C., Wang, P. F., Toland, H., & He, Z. L. (2016). Characterization of bacterial community in biofilm and sediments of wetlands dominated by aquatic macrophytes. Ecological Engineering, 97, 242-250.

Pannuri, A., Vakulskas, C. A., Zere, T., McGibbon, L. C., Edwards, A. N., Georgellis, D., Babitzke, P., & Romeo, T. (2016). Circuitry Linking the Catabolite Repression and Csr Global Regulatory Systems of Escherichia coli. Journal of Bacteriology, 198(21), 3000-3015.

Panthi, B. R., Seal, D. R., Capinera, J. L., Nuessly, G. S., & Martin, G. (2016). Host selection, growth, and survival of melonworm (Lepidoptera: Crambidae) on four cucurbit crops under laboratory conditions. Environmental Entomology, 45(4), 945-951.

Paranhos, L. G., Barrett, C. E., Zotarelli, L., Borisova, T., Darnell, R., & Migliaccio, K. (2016). Cost-benefit Analysis of Cabbage Grown Using a Plasticulture and Seepage Bare Ground Production System in Florida. HortTechnology, 26(6), 699-706.

Paranhos, L. G., Barrett, C. E., Zotarelli, L., Darnell, R., Migliaccio, K., & Borisova, T. (2016). Planting date and in-row plant spacing effects on growth and yield of cabbage under plastic mulch. Scientia Horticulturae, 202(20), 49-56.

Paris, T. M., Allan, S. A., Hall, D. G., Hentz, M. G., Croxton, S. D., Ainpudi, N., & Stansly, P. A. (2016). Effects of Temperature, Photoperiod, and Rainfall on Morphometric Variation of Diaphorina citri (Hemiptera: Liviidae). Environmental Entomology, doi.org/10.1093/ee/nvw161

Paris, T. M., Allan, S. A., Hall, D. G., Hentz, M. G., Hetesy, G., & Stansly, P. A. (2016). Host plant affects morphometric variation of Diaphorina citri (Hemiptera: Liviidae). PeerJ, 4, doi: 10.7717/peerj.2663.

Patel, J. S., Zhang, S., & McGrath, M. T. (2016). Red light increases suppression of downy mildew in basil by chemical and organic products. Journal of Phytopathology, 164(11-12), 1022-1029.

Pathak, A., Chauhan, A., Blom, J., Indest, K. J., Jung, C. M., Stothard, P., Bera, G., Green, S. J., & Ogram, A. (2016). Comparative Genomics and Metabolic Analysis Reveals Peculiar Characteristics of Rhodococcus opacus Strain M213 Particularly for Naphthalene Degradation. PLoS ONE, 11(8), e0161032.

Patterson, J., Flint, M., Than, J., & Watson, C. (2016). Evaluation of substrate properties for settlement of Caribbean staghorn coral Acropora cervicornis larvae in a land-based system. North American Journal of Aquaculture, 78, 337-345.

Patterson, J., Ohs, C., O'Malley, P., Palau, A., D'Abramo, L., Reigh, R., Green, C. (2016). Feeding larval Gulf killifish: Total replacement of Artemia nauplii and co-feeding from hatch. North American Journal of Aquaculture, 78(4), 396-404.

Paudel, R., & Jawitz, J. W. (2016). Spatially distributed hydrodynamic modeling of phosphorus transport and transformation in a cell-network treatment wetland. Journal of Hydrologic Engineering, 22(1), D4016001.

Paul, V. G., Wronkiewicz, D. J., Mormile, M. R., & Foster, J. S. (2016). Mineralogy and Microbial Diversity of the Microbialites in the Hypersaline Storr's Lake, the Bahamas. Astrobiology, 16(4), 282-300.

Pearson, B. J., Smith, R. M., & Chen, J. (2016). Growth, strobile yield, and quality of four Humulus lupulus varieties cultivated in a protected open-sided greenhouse structure. Hortscience, 51(7), 838-842.

Pedreira, C. G. S., Silva, V. J., Newman, Y. C., & Sollenberger, L. E. (2016). Yearling Cattle Performance on Continuously Stocked 'Tifton 85' and 'Florakirk' Bermudagrass Pastures. Crop Science, 56(6), 3354-3360.

Pelz-Stelinski, K. S., & Killiny, N. (2016). Better Together: Association With 'Candidatus Liberibacter Asiaticus' Increases the Reproductive Fitness of Its Insect Vector, Diaphorina citri (Hemiptera: Liviidae). Annals of the Entomological Society of America, 109(3), 371-376.

Penca, C., Adams, D. C., & Hulcr, J. (2016). The Cuba-Florida plant-pest pathway.

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