26, 909-915. (doi: 10. 1038/nbt. 1482) Abrahamsen ms, Templeton tj, Enomoto S, Abrahante je, Zhu G, Lancto ca, Deng M, Liu C, Widmer G, Tzipori s et al. 2004 Complete genome sequence of the apicomplexan, Cryptosporidium parvum. Science 304



Download 0.51 Mb.
Page6/6
Date20.10.2016
Size0.51 Mb.
#5512
1   2   3   4   5   6
2, e1326. (doi: 10.1371/journal.pone.0001326)

  • Velasco R, Zharkikh A, Affourtit J, Dhingra A, Cestaro A, Kalyanaraman A, Fontana P, Bhatnagar SK, Troggio M, Pruss D et al. 2010 The genome of the domesticated apple (Malus × domestica Borkh.). Nat. Genet. 42, 833-839. (doi: 10.1038/ng.654)

  • Venkatesh B, Kirkness EF, Loh Y-H, Halpern AL, Lee AP, Johnson J, Dandona N, Viswanathan LD, Tay A, Venter JC et al. 2007 Survey sequencing and comparative analysis of the elephant shark (Callorhinchus milii) genome. PLoS Biol. 5, e101. (doi: 10.1371/journal.pbio.0050101)

  • Venkatesh B, Lee AP, Ravi V, Maurya AK, Lian MM, Swann JB, Ohta Y, Flajnik MF, Sutoh Y, Kasahara M et al. 2014 Elephant shark genome provides unique insights into gnathostome evolution. Nature 505, 174-179. (doi:10.1038/nature12826)

  • Vinson JP, Jaffe DB, O'Neill K, Karlsson EK, Stange-Thomann N, Anderson S, Mesirov JP, Satoh N, Satou Y, Nusbaum C et al. 2005 Assembly of polymorphic genomes, algorithms and application to Ciona savignyi. Genome Res. 15, 1127-1135. (doi:10.1101/gr.3722605)

  • Volleth M, Heller K-G. 2012 Variations on a theme, Karyotype comparison in Eurasian Myotis species and implications for phylogeny. Vespertillo 116,329-350.

  • Vonk FJ, Casewell NR, Henkel CV, Heimberg AM, Jansen HJ, McCleary RJR, Kerkkamp HME, Vos RA, Guerreiro I, Calvete JJ et al. 2013 The king cobra genome reveals dynamic gene evolution and adaptation in the snake venom system. Proc. Natl. Acad. Sci. USA. 110, 20651-20656. (doi: 10.1073/pnas.1314702110)

  • Voskoboynik A, Neff NF, Sahoo D, Newman aM, Pushkarev D, Koh W, Passarelli B, Fan HC, Mantalas GL, Palmeri KJ et al. 2013 The genome sequence of the colonial chordate, Botryllus schlosseri. eLife 2, e00569-e00569. (doi: http://dx.doi.org/10.7554/eLife.00569#sthash.2XX3ZIHe.dpuf)

  • Wade CM, Giulotto E, Sigurdsson S, Zoli M, Gnerre S, Imsland F, Lear TL, Adelson DL, Bailey E, Bellone RR et al. 2009 Genome sequence, comparative analysis, and population genetics of the domestic horse. Science 326, 865-867. (doi: 10.1126/science.1178158)

  • Wan Q-H, Pan S-K, Hu L, Zhu Y, Xu P-W, Xia J-Q, Chen H, He G-Y, He J, Ni X-W et al. 2013 Genome analysis and signature discovery for diving and sensory properties of the endangered Chinese alligator. Cell Res. 23, 1091-1105. (doi: 10.1038/cr.2013.104)

  • Wang X, Chen W, Huang Y, Sun J, Men J, Liu H, Luo F, Guo L, Lv X, Deng C et al. 2011 The draft genome of the carcinogenic human liver fluke Clonorchis sinensis. Genome Biol. 12, R107. (doi:10.1186/gb-2011-12-10-r107)

  • Wang X, Fang X, Yang P, Jiang X, Jiang F, Zhao D, Li B, Cui F, Wei J, Ma C et al. 2014 The locust genome provides insight into swarm formation and long-distance flight. Nat. Comm. 5, 2957. (doi:10.1038/ncomms3957)

  • Wang W, Haberer G, Gundlach H, Gläßer C, Nussbaumer T, Luo MC, Lomsadze A, Borodovsky M, Kerstetter Ra, Shanklin J et al. 2014 The Spirodela polyrhiza genome reveals insights into its neotenous reduction fast growth and aquatic lifestyle. Nat. Comm. 5, 3311. (doi:10.1038/ncomms4311)

  • Wang Z, Hobson N, Galindo L, Zhu S, Shi D, McDill J, Yang L, Hawkins S, Neutelings G, Datla R et al. 2012 The genome of flax (Linum usitatissimum) assembled de novo from short shotgun sequence reads. Plant J. 72, 461-473. (doi: 10.1111/j.1365-313X.2012.05093.x)

  • Wang Z, Pascual-Anaya J, Zadissa A, Li W, Niimura Y, Huang Z, Li C, White S, Xiong Z, Fang D et al. 2013 The draft genomes of soft-shell turtle and green sea turtle yield insights into the development and evolution of the turtle-specific body plan. Nat. Genet. 45, 701-706. (doi:10.1038/ng.2615)

  • Wang Y-Y, Liu B, Zhang X-Y, Zhou Q-M, Zhang T, Li H, Yu Y-F, Zhang X-L, Hao X-Y, Wang M et al. 2014 Genome characteristics reveal the impact of lichenization on lichen-forming fungus Endocarpon pusillum Hedwig (Verrucariales, Ascomycota). BMC Genomics 15, 34. (doi:10.1186/1471-2164-15-34)

  • Wang K, Wang Z, Li F, Ye W, Wang J, Song G, Yue Z, Cong L, Shang H, Zhu S et al. 2012 The draft genome of a diploid cotton Gossypium raimondii. Nat. Genet. 44, 1098-1103. (doi:10.1038/ng.2371)

  • Wang L, Chen W, Feng Y, Ren Y, Gu Z, Chen H, Wang H, Thomas MJ, Zhang B, Berquin IM et al. 2011 Genome characterization of the oleaginous fungus Mortierella alpina. PLoS One 6, e28319. (doi: 10.1371/journal.pone.0028319)

  • Warren WC, Clayton DF, Ellegren H, Arnold AP, Hillier LW, Künstner A, Searle S, White S, Vilella AJ, Fairley S et al. 2010 The genome of a songbird. Nature 464,757-762. (doi:10.1038/nature08819)

  • Warren WC, Hillier LW, Marshall Graves JA, Birney E, Ponting CP, Grützner F, Belov K, Miller W, Clarke L, Chinwalla AT et al. 2008 Genome analysis of the platypus reveals unique signatures of evolution. Nature 453, 175-183. (doi:10.1038/nature06936)

  • Wendland J, Walther A. 2011 Genome evolution in the Eremothecium clade of the Saccharomyces complex revealed by comparative genomics. G3 1, 539-548. (doi: 10.1534/g3.111.001032)

  • Wendland J, Walther A. 2014 Chromosome number reduction in Eremothecium coryli by two telomere-to-telomere fusions. Genome Biol. Evol. 6, 1186-1198. (doi: 10.1093/gbe/evu089)

  • Wibberg D, Jelonek L, Rupp O, Hennig M, Eikmeyer F, Goesmann A, Hartmann A, Borriss R, Grosch R, Pühler A et al. 2013 Establishment and interpretation of the genome sequence of the phytopathogenic fungus Rhizoctonia solani AG1-IB isolate 7/3/14. J. Biotech. 167, 142-155. (doi: 10.1016/j.jbiotec.2012.12.010)

  • Wicker T, Oberhaensli S, Parlange F, Buchmann JP, Shatalina M, Roffler S, Ben-David R, Doležel J, Simková H, Schulze-Lefert P et al. 2013 The wheat powdery mildew genome shows the unique evolution of an obligate biotroph. Nat. Genet. 45, 1092-1096. (doi:10.1038/ng.2704)

  • Wilken PM, Steenkamp ET, Wingfield MJ, de Beer ZW, Wingfield BD. 2013 Draft nuclear genome sequence for the plant pathogen, Ceratocystis fimbriata. IMA Fungus 4, 357-358. ( doi: 10.5598/imafungus.2013.04.02.14.)

  • Wohlbach DJ, Kuo A, Sato TK, Potts KM, Salamov AA, Labutti KM, Sun H, Clum A, Pangilinan JL, Lindquist EA et al. 2011 Comparative genomics of xylose-fermenting fungi for enhanced biofuel production. Proc. Natl. Acad. Sci. USA. 108, 13212-13217. (doi: 10.1073/pnas.1103039108)

  • Wollenberg T, Schirawski J. 2014 Comparative genomics of plant fungal pathogens, The Ustilago-Sporisorium paradigm. PLoS Pathog. 10, e1004218. (doi:10.1371/journal.ppat.1004218)

  • Woo PCY, Lau SKP, Liu B, Cai JJ, Chong KTK, Tse H, Kao RYT, Chan C-M, Chow W-N, Yuen K-Y. 2011 Draft genome sequence of Penicillium marneffei strain PM1. Eukaryot. Cell 10, 1740-1741. (doi: 10.1128/EC.05255-11)

  • Wood V, Gwilliam R, Rajandream MA, Lyne M, Lyne R, Stewart A, Sgouros J, Peat N, Hayles J, Baker S et al. 2002 The genome sequence of Schizosaccharomyces pombe. Nature 415, 871-880. (doi:10.1038/nature724)

  • Worden AZ, Lee J-H, Mock T, Rouzé P, Simmons MP, Aerts AL, Allen AE, Cuvelier ML, Derelle E, Everett MV et al. 2009 Green evolution and dynamic adaptations revealed by genomes of the marine picoeukaryotes Micromonas. Science 9375, 268-272. (doi: 10.1126/science.1167222)

  • Wormbase. 2015. http://www.wormbase.org, release WS246. Accessed April 2015.

  • Wu GA, Prochnik S, Jenkins J, Salse J, Hellsten U, Murat F, Perrier X, Ruiz M, Scalabrin S, Terol J et al. 2014 Sequencing of diverse mandarin, pummelo and orange genomes reveals complex history of admixture during citrus domestication. Nat. Biotech. 32, 656-662. (doi:10.1038/nbt.2906)

  • Wu J, Wang Z, Shi Z, Zhang S, Ming R, Zhu S, Khan MA, Tao S, Korban SS, Wang H et al. 2013 The genome of the pear (Pyrus bretschneideri Rehd.). Genome Res. 23, 396-408. (doi: 10.1101/gr.144311.112)

  • Wu H-J, Zhang Z, Wang J-Y, Oh D-H, Dassanayake M, Liu B, Huang Q, Sun H-X, Xia R, Wu Y et al. 2012 Insights into salt tolerance from the genome of Thellungiella salsuginea. Proc. Natl. Acad. Sci. USA. 109, 12219-12224. (doi: 10.1073/pnas.1209954109)

  • Wurm Y, Wang J, Riba-Grognuz O, Corona M, Nygaard S, Hunt B, Ingram K, Falquet L, Nipitwattanaphon M, Gotzek D et al. 2011 The genome of the fire ant Solenopsis invicta. Proc. Natl. Acad. Sci. USA. 108, 5679-5684. (doi: 10.1073/pnas.1009690108)

  • Xia Q, Zhou Z, Lu C, Cheng D, Dai F, Li B, Zhao P, Zha X, Cheng T, Chai C et al. 2004 A draft sequence for the genome of the domesticated silkworm (Bombyx mori). Science. 306, 1937-1940. (doi: 10.1126/science.1102210)

  • Xiao H, Yong-Jie Z, Guo-Hua X, Peng Z, Yong-Liang X, Xing-Yu Z, St Leger R, Xing-Zhong L, Cheng-Shu W. 2013 Genome survey uncovers the secrets of sex and lifestyle in caterpillar fungus. Chinese Sci. Bull. 58, 2846-2854. (doi: 10.1007/s11434-013-5929-5)

  • Xu Q, Chen L-L, Ruan X, Chen D, Zhu A, Chen C, Bertrand D, Jiao W-B, Hao B-H, Lyon MP et al. 2013 The draft genome of sweet orange (Citrus sinensis). Nat. Genet. 45, 59-66. (doi:10.1038/ng.2472)

  • Xu P, Widmer G, Wang Y, Ozaki LS, Alves JM, Serrano MG, Puiu D, Manque P, Akiyoshi D, Mackey AJ et al. 2004 The genome of Cryptosporidum hominis. Nature 431, 1107-1112. (doi:10.1038/nature02977)

  • Xu J, Saunders CW, Hu P, Grant RA, Boekhout T, Kuramae EE, Kronstad JW, Deangelis YM, Reeder NL, Johnstone KR et al. 2007 Dandruff-associated Malassezia genomes reveal convergent and divergent virulence traits shared with plant and human fungal pathogens. Proc. Natl. Acad. Sci. USA. 104, 18730-18735. (doi: 10.1073/pnas.0706756104)

  • Xue M, Yang J, Li Z, Hu S, Yao N, Dean RA, Zhao W, Shen M, Zhang H, Li C et al. 2012 Comparative analysis of the genomes of two field isolates of the rice blast fungus Magnaporthe oryzae. PLoS Genet. 8, e1002869. (doi: 10.1371/journal.pgen.1002869)

  • Yagi M, Kosugi S, Hirakawa H, Ohmiya A, Tanase K, Harada T, Kishimoto K, Nakayama M, Ichimura K, Onozaki T et al. 2013 Sequence analysis of the genome of carnation (Dianthus caryophyllus L.). DNA Res. 21, 231-241. (doi: 10.1093/dnares/dst053)

  • Yan G, Zhang G, Fang X, Zhang Y, Li C, Ling F, Cooper DN, Li Q, Li Y, van Gool AJ et al. 2011 Genome sequencing and comparison of two nonhuman primate animal models, the cynomolgus and Chinese rhesus macaques. Nat. Biotech. 29, 1019-1023. (doi:10.1038/nbt.1992)

  • Yang R, Jarvis DE, Chen H, Beilstein MA, Grimwood J, Jenkins J, Shu S, Prochnik S, Xin M, Ma C et al. 2013 The reference genome of the halophytic plant Eutrema salsugineum. Front. Plant Sci. 4, 46. (doi: 10.3389/fpls.2013.00046)

  • Yang E, Chow W-N, Wang G, Woo PCY, Lau SKP, Yuen K-Y, Lin X, Cai JJ. 2014 Signature gene expression reveals novel clues to the molecular mechanisms of dimorphic transition in Penicillium marneffei. PLoS Genet. 10, e1004662. (doi: 10.1371/journal.pgen.1004662)

  • Yang J, Wang L, Ji X, Feng Y, Li X, Zou C, Xu J, Ren Y, Mi Q, Wu J et al. 2011 Genomic and proteomic analyses of the fungus Arthrobotrys oligospora provide insights into nematode-trap formation. PLoS Pathog. 7, e1002179. (doi: 10.1371/journal.ppat.1002179)

  • Yang Y, Zhao H, Barrero RA, Zhang B, Sun G, Wilson IW, Xie F, Walker KD, Parks JW, Bruce R et al. 2014 Genome sequencing and analysis of the paclitaxel-producing endophytic fungus Penicillium aurantiogriseum NRRL 62431. BMC Genomics 15, 69. (doi:10.1186/1471-2164-15-69)

  • Yap H-YY, Chooi Y-H, Firdaus-Raih M, Fung S-Y, Ng S-T, Tan C-S, Tan N-H. 2014 The genome of the Tiger Milk mushroom, Lignosus rhinocerotis, provides insights into the genetic basis of its medicinal properties. BMC Genomics 15, 635. (doi:10.1186/1471-2164-15-635)

  • Yim H-S, Cho YS, Guang X, Kang SG, Jeong J-Y, Cha S-S, Oh H-M, Lee J-H, Yang EC, Kwon KK et al. 2013 Minke whale genome and aquatic adaptation in cetaceans. Nat. Genet. 46, 88-92. (doi:10.1038/ng.2835)

  • You M, Yue Z, He W, Yang X, Yang G, Xie M, Zhan D, Baxter SW, Vasseur L, Gurr GM et al. 2013 A heterozygous moth genome provides insights into herbivory and detoxification. Nat. Genet. 45, 220-225. (doi:10.1038/ng.2524)

  • Young ND, Debellé F, Oldroyd GED, Geurts R, Cannon SB, Udvardi MK, Benedito VA, Mayer KFX, Gouzy J, Schoof H et al. 2011 The Medicago genome provides insight into the evolution of rhizobial symbioses. Nature 480, 520-524. (doi:10.1038/nature10625)

  • Youssar L, Grüning BA, Erxleben A, Günther S, Hüttel W. 2012 Genome sequence of the fungus Glarea lozoyensis, the first genome sequence of a species from the Helotiaceae family. Eukaryot. Cell 11, 250. (doi: 10.1128/EC.05302-11)

  • Youssef NH, Couger MB, Struchtemeyer CG, Liggenstoffer AS, Prade RA, Najar FZ, Atiyeh HK, Wilkins MR, Elshahed MS. 2013 Genome of the anaerobic fungus Orpinomyces sp. C1A reveals the unique evolutionary history of a remarkable plant biomass degrader. Appl. Environ. Microb. 79, 4620-4634. (doi: 10.1128/AEM.00821-13)

  • Yu J, Hu S, Wang J, Wong GK-S, Li S, Liu B, Deng Y, Dai L, Zhou Y, Zhang X et al. 2002 A draft sequence of the rice genome (Oryza sativa L. ssp. indica). Science 296, 79-92. (doi: 10.1126/science.1068037)

  • Yu J, Zhao M, Wang X, Tong C, Huang S, Tehrim S, Liu Y, Hua W, Liu S. 2013 Bolbase, a comprehensive genomics database for Brassica oleracea. BMC Genomics. 14, 664. (doi:10.1186/1471-2164-14-664)

  • Zajc J, Liu Y, Dai W, Yang Z, Hu J, Gostincar C, Gunde-Cimerman N. 2013 Genome and transcriptome sequencing of the halophilic fungus Wallemia ichthyophaga, haloadaptations present and absent. BMC Genomics 14, 617. (doi:10.1186/1471-2164-14-617)

  • Zimin AV, Delcher AL, Florea L, Kelley DR, Schatz MC, Puiu D, Hanrahan F, Pertea G, Van Tassell CP, Sonstegard TS et al. 2009 A whole-genome assembly of the domestic cow, Bos taurus. Genome Biol. 10, R42. (doi:10.1186/gb-2009-10-4-r42)

  • Zuccaro A, Basiewicz M, Zurawska M, Biedenkopf D, Kogel KH. 2009 Karyotype analysis, genome organization, and stable genetic transformation of the root colonizing fungus Piriformospora indica. Fungal Genet. Biol. 46, 543-550. (doi: 10.1016/j.fgb.2009.03.009)

  • Zuccaro A, Lahrmann U, Güldener U, Langen G, Pfiffi S, Biedenkopf D, Wong P, Samans B, Grimm C, Basiewicz M et al. 2011 Endophytic life strategies decoded by genome and transcriptome analyses of the mutualistic root symbiont Piriformospora indica. PLoS Pathog. 7, e1002290. (doi: 10.1371/journal.ppat.1002290)

  • Zuccolo A, Bowers JE, Estill JC, Xiong Z, Luo M, Sebastian A, Goicoechea JL, Collura K, Yu Y, Jiao Y et al. 2011 A physical map for the Amborella trichopoda genome sheds light on the evolution of angiosperm genome structure. Genome Biol. 12, R48. (doi:10.1186/gb-2011-12-5-r48)

  • Zhan X, Pan S, Wang J, Dixon A, He J, Muller MG, Ni P, Hu L, Liu Y, Hou H et al. 2013 Peregrine and saker falcon genome sequences provide insights into evolution of a predatory lifestyle. Nat. Genet. 45, 563-566. (doi:10.1038/ng.2588)

  • Zhang Q, Chen W, Sun L, Zhao F, Huang B, Yang W, Tao Y, Wang J, Yuan Z, Fan G et al. 2012 The genome of Prunus mume. Nat. Comm. 3, 1318. (doi:10.1038/ncomms2290)

  • Zhang G, Cowled C, Shi Z, Huang Z, Bishop-Lilly KA, Fang X, Wynne JW, Xiong Z, Baker ML, Zhao W et al. 2013 Comparative analysis of bat genomes provides insight into the evolution of flight and immunity. Science 339, 456-460. (doi: 10.1126/science.1230835)

  • Zhang L, Li L, Xu F, Qi H, Wang X, Que H, Zhang G. 2013 Fosmid library construction and end sequences analysis of the Pacific oyster, Crassostrea gigas. Molluscan Res. 33, 65-73. (doi: 10.1080/13235818.2012.754149)

  • Zhang G, Fang X, Guo X, Li L, Luo R, Xu F, Yang P, Zhang L, Wang X, Qi H et al. 2012 The oyster genome reveals stress adaptation and complexity of shell formation. Nature 490, 49-54. (doi:10.1038/nature11413)

  • Zhang Y, Zhang K, Fang A, Han Y, Yang J, Xue M, Bao J, Hu D, Zhou B, Sun X et al. 2014 Specific adaptation of Ustilaginoidea virens in occupying host florets revealed by comparative and functional genomics. Nat. Comm. 5, 3849. (doi:10.1038/ncomms4849)

  • Zheng W, Huang L, Huang J, Wang X, Chen X, Zhao J, Guo J, Zhuang H, Qiu C, Liu J et al. 2013 High genome heterozygosity and endemic genetic recombination in the wheat stripe rust fungus. Nat. Comm. 4, 2673. (doi:10.1038/ncomms3673)

  • Zheng H, Zhang W, Zhang L, Zhang Z, Li J, Lu G, Zhu Y, Wang Y, Huang Y, Liu J et al. 2013 The genome of the hydatid tapeworm Echinococcus granulosus. Nat. Genet. 45, 1168-1175. (doi:10.1038/ng.2757)

  • Zhou W, Hu Y, Sui Z, Fu F, Wang J, Chang L, Guo W, Li B. 2013 Genome survey sequencing and genetic background characterization of Gracilariopsis lemaneiformis (Rhodophyta) based on next-generation sequencing. PLoS One. 8, e69909. (doi: 10.1371/journal.pone.0069909)

  • Zhou P, Zhang G, Chen S, Jiang Z, Tang Y, Henrissat B, Yan Q, Yang S, Chen C-F, Zhang B et al. 2014 Genome sequence and transcriptome analyses of the thermophilic zygomycete fungus Rhizomucor miehei. BMC Genomics 15, 294. (doi:10.1186/1471-2164-15-294)

  • Zhou X, Sun F, Xu S, Fan G, Zhu K, Liu X, Chen Y, Shi C, Yang Y, Huang Z et al. 2013 Baiji genomes reveal low genetic variability and new insights into secondary aquatic adaptations. Nat. Comm. 4, 2708. (doi:10.1038/ncomms3708)

  • Zhu H, Blackmon BP, Sasinowski M, Dean RA. 1999 Physical map and organization of chromosome 7 in the rice blast fungus, Magnaporthe grisea. Genome Res. 9, 739-750. (doi: 10.1101/gr.9.8.739)


    Download 0.51 Mb.

    Share with your friends:
  • 1   2   3   4   5   6




    The database is protected by copyright ©ininet.org 2024
    send message

        Main page