Undergraduate Thesis Supervision

Undergraduate Thesis Supervision

Research Support: Principal Investigator or Co-Investigator

NSF CCF-1320360, SHF: Small: Localized DNA Hybridization Computation (PI John H. Reif), 8/6/2013 – 7/30/2016, $400,000.

NSF CCF- 1217457, SHF: Small: Error Correction for Biomolecular Computations (PI John H. Reif), 7/1/2012 – 6/30/2015, $449,998.

NSF CCF-1141847, EAGER: Exploratory Software Development & Experiments of Dynamic DNA Nanosystems (PI John H. Reif), 9/1/2011 – 8/31/2013, $199,997.

NSF EMT Grant CCF-0829797: EMT/NANO: Autonomous Programmable DNA Devices Using DNAzymes (PI John H. Reif), 09/4/2008-08/31/2011, $200,000.00.

NSF EMT Grant CCF-0829798: EMT/NANO: Polymerase-Based Self-Activating and Reactivating DNA Systems, (PI John H. Reif with coPI Thomas H. LaBean), 09/01/2008-08/31/2009, $200,000, with expected continued support for 2009 and 2010 for $150,000/year.

AFSOR Contract FA9550-08-1-0188, Bio-X-AFSOR: Encapsulated DNA-Based Molecular Autonomous Sensing Devices With Photonic Output (PI John H. Reif), April, 2008-Dec 2008, $200,000

NSF EMT Grant CCF-0551965: EMT: NSF Workshop: Emerging Opportunities of Nanoscience to Energy Conversion and Storage (PI John H. Reif), September 1, 2005- September 1, 2006, $49,900. http://www.cs.duke.edu/~reif/NSF.NanoEnergy/

NSF EMT Grant CCF-0523555: EMT: A DNA-Based Autonomous Programmable Molecular Transport Network (PI John H. Reif with coPI Thomas H. LaBean), July 15, 2005- August 31, 2007, $300,000

NSF EMT Grant CCF-0523558: EMT: NSF Workshop of Programmed Self-Assembly (PI John H. Reif), May. 1, 2005-October 31, 2005, $30,000.

NSF EMT Grant CCF-0432038: Nano: Error-Resilient DNA Tiling Assemblies (PI John H. Reif with coPI Thomas H. LaBean), Sept. 1, 2004-Aug. 30, 2007, $295,000.

NSF EMT Grant CCF-0432047: NANO: Combinatorial Self-assembly of Nanocircuits on Addressable DNA Nanoscaffolds (PI Hao Yan with coPIs: Chris L. Dwyer, Gleb Finkelstein, John H. Reif, Thomas LaBean), Sept. 1, 2004-Aug. 30, 2007, $300,000

Taiko Denki Inc. Industrial Grant: Applications of DNA Self-Assembly Nanofabrication Technology to Molecular Scale Electrical Contacts (PI John H. Reif with coPI Thomas H. LaBean), Taiko Denki Inc., Tokyo, Japan, Jan. 1, 2004-Dec. 30, 2005, $110,000.

NSF ITR 0326157: Nanoarchitecture: Balancing Regularity, Complexity and Defect Tolerance using DNA for Nanoelectronic Integration(PI: Alvin LeBeck CoPIs: Dan Sorin, Jie Liu, John H. Reif, Thom LaBean, Hao Yan, Sean Washburn, Dorothy Erie, Paul Franzon), Sept 1, 2003- Aug 31, 2006. $1,200,000.

NSF QuBIC EIA-0218376: Novel DNA Nanostructures for Targeted Molecular Scale to Micro Scale Interconnects. (PI: Thomas H. LaBean, CoPI: John H. Reif) NSF EIA-0218376, Sept 1, 2002- Aug 31, 2005. $349,999.

NSF EIA-0218359: Molecular Robotics for DNA Nanostructures. (PI: Hao Yan, CoPI: John H. Reif), Sept 1, 2002- Aug 31, 2005. $349,995.

Taiko Denki Inc. Industrial Grant: DNA Self-Assembly Nanofabrication Technology to Molecular Scale Electrical Contacts (PI John H. Reif with coPI Thomas H. LaBean), Taiko Denki Inc., Tokyo, Japan, Sept. 1, 2002- Sept. 30, 2003, $60,000.

Programmable DNA Lattices: Design, Synthesis and Applications (PI John H. Reif), BioComp Program, DARPA/AFSOR Contract, F30602-01-2-0561 July 1, 2000-Dec 30, 2004, $2,550,000.

Supplemental Augmentation to: Programmable DNA Lattices: Design, Synthesis and Applications (PI John H. Reif), BioComp Program, DARPA/AFSOR Contract, F30602-01-2-0561 Jan 1, 2002-Dec 30, 2002, $112,662 for FY2002.

Micro and Nano-Robotics Motion Control Algorithms (PI John H. Reif), NSF SEGR Award NSF-11S-01-94604, Sept 1, 2000-Sept 30, 2001, $80,772.

NSF ITR Grant EIA-0086015: Supplemental Augmentation to: Self-Assembly of DNA Nano-Scale Structures for Computation (PI John H. Reif), additional $413,000 awarded in FY 2004.

NSF ITR Grant EIA-0086015: Self-Assembly of DNA Nano-Scale Structures for Computation, (PI John H. Reif), Sept 1, 2000-Sept 30, 2005, $2,019,999. (awarded $1,184,999 September 1, 2000-August 31, 2003.

Prototyping Biomolecular Computations, (PI John H. Reif), jointly funded by Defense Advanced Research Projects Agency and National Science Foundation, NSF CCR-9725021, July 1997-Sept 2001, $2,748,017.

Moleware and the Molecular Computer, Subcontract PI (overall PI: James M. Tour), DARPA/ONR N00014-99-1-0406, 01 Mar 99 through 28 Feb. 2001, Subcontract $50,000.

Robust, Adaptive and Dynamic Robotic Motion Planning, (PI John H. Reif), NSF Grant NSF-IRI-9619647, 5/97-06/2000, $295,000.

SEGR: Design of a Biomolecular Distributed Operating System, (PI John H. Reif), NSF Grant CCR-9810000, Aug 1998-1999, $50,000.

CURIOUS: (C)enter for (U)ndergraduate Education and (R)esearch: (I)ntegration Thr(OU)gh Vi(S)ualization, (Co-principal investigator). NSF CDA-96-34475 09/96 - 08/99 $ 405,200

Acquisition of a Workstation Cluster Testbed for Next-Generation Collaborative Computing (Co-principal investigator). National Science Foundation Grant contract CDA-95-12356, 09/95 - 08/98, $489,600

Multidisciplinary Research for Demining, (Co-principal investigator of subcontract with E. Gelenbe, N Schmajuk and J. Staddon,) Army Research Office(ARO) contract DAAH-04-96-1-0448, 11/96 - 10/99, total contract: $3,000,600, Subcontract $431,000./year.

An Exploratory Study of Parallel Molecular Computation, (PI John H. Reif) National Science Foundation Grant number CCR-96-33567, 08/96 - 07/97 $50,000

Toward Autonomous Robots: Robust, Adaptive and Dynamic Motion Planning, (PI John H. Reif), National Science Foundation Grant NSF-IRI-91-00681,02/92 - 01/97, $365,755,

SIMD/MIMD Parallel Computing: Computational Theory, Scientific Applications, and Systems Research, (Co-principal investigator with C.S. Ellis, C. Gardner, H.S. Greenside, D.W. Loveland, and D.J. Rose) National Science Foundation Grant number CDA-91-23483, CISE Institutional Infrastructure Program, 09/92 - 08/98, $1,420,001 plus institutional support of $421,209.

A Refinement-Based Methodology for the Architecture-Independent Design and Development of Parallel Software, (Co-principal investigator with Andrew Goldberg and Jan Prins). Rome Laboratory contract F30602-94-C-0037, Subcontract to Kestrel Development Corporation, $314,495.

Common Prototyping Language (CPL) based on SETL, REFINE, and UNITY, DARPA/ISTO contract N00014-92-C-0182 under subcontract KI-92-01-0182 from Kestrel Institute, Additional $665,147, September 1, 1992 through August 31, 1995

Common Prototyping Language (CPL) based on SETL, REFINE, and UNITY, DARPA/ISTO, Subcontracted from Kestrel Institute, Additional $240,000, May 1, 1991-March 30, 1992.

Derivation and Analysis Tools for the Synthesis and Implementation of Parallel Algorithms, (PI John H. Reif), DARPA/ISTO contract N00014-91-J-1985, $1,560,000, July 1, 1991-June 30, 1994.

Parallel Compression of Space and Earth Data, (PI John H. Reif), NASA, Prime Contract Number: NAS5-30428, Subcontract 550-63, $491,699, October 1, 1991-September 30, 1993.

Randomized Methods in Distributed and Parallel Computation, (with B. Chor), Binational Science Foundation, $36,000, September 1, 1989-August 31, 1992.

Common Prototyping Language (CPL) based on SETL, REFINE, and UNITY, DARPA/ISTO, Subcontracted from Kestrel Institute, $162,240, October 1, 1989-September 30, 1990.

Very High Speed Holographic Message Routing for Parallel Machines, (PI John H. Reif), DARPA/ARMY, $290,673, September 1, 1988-August 31, 1990.

Parallel Compression of Space and Earth Data, (PI John H. Reif), NASA, $435,000, October 1, 1988-September 30, 1991.

Parallel Algorithm Derivation, (PI John H. Reif), DARPA/ISTO, $696,899, July 1, 1987-June 30, 1991.

Computational Complexity and Efficiency in Electro-optical Computing Systems, (PI John H. Reif), Air Force Office of Scientific Research, $442,772, September 1, 1987-August 31,1990.

Randomized Parallel Algorithms in Learning, (PI John H. Reif), Office of Naval Research, $228,707, January 1, 1987-February 28, 1989.

Randomized Techniques for Highly Parallel Computing, (PI John H. Reif), Office for Naval Research, $93,475, July 1, 1984-June 30, 1986.

Parallel and Probabilistic Computations, (Co-Investigator with H. R. Lewis) National Science Foundation, $113,455, July 1, 1982-December 31, 1984.

Distributed Multi-processing, (PI John H. Reif), Office for Naval Research, $132,000, July 1, 1980 -June 30,1984.

Graph Algorithms in Program Analysis and Topological Imbeddings, (PI John H. Reif), National Science Foundation, $25,000, October 1, 1979-July 31, 1982.