Matthew p. Hare



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MATTHEW P. HARE
Cornell University

Department of Natural Resources

205 Fernow Hall

Ithaca, NY 14853

607-255-5685, mph75@cornell.edu

http://www.dnr.cornell.edu/people/faculty/profiles/hare.html


EDUCATION
Harvard University, Cambridge, MA, 1996-2000

Postgraduate with Dr. Stephen Palumbi



University of Georgia, Athens, GA 1996

Ph.D. in Genetics, with Dr. John Avise



University of Alaska, Fairbanks, AK 1990

M.S. in Zoology, with Dr. Gerald Shields



College of the Atlantic, Bar Harbor, Maine

B.A. in Human Ecology, 1984.


PROFESSIONAL EMPLOYMENT
Associate Professor, Department of Natural Resources, Cornell University 7/07 – present

Assistant Professor, Department of Biology, University of Maryland College Park 8/00 – 6/07

Hrdy Biodiversity Fellow, Harvard University 9/99 – 7/00

Instructor, Harvard University undergraduate tutorial seminar 9/97 – 5/00

NIH Pre-doctoral Fellow, Genetics Department, University of Georgia 6/91 – 8/96

Teaching Assistantship, Genetics Department, University of Georgia 9/90 – 6/91

Research Assistantship, U.S. Fish & Wildlife Service, University of Alaska 6/89 – 6/90

Teaching Assistantship, University of Alaska 9/87 – 6/89

Museum technician, Division of Mammals, National Museum of Natural History, Smithsonian Institution 8/84 – 7/86

PUBLICATIONS
Submitted or in revision

  1. Sun, C.C., A.K. Fuller, M.P. Hare and J.E. Hurst. In revision. Evaluating population expansion of black bears using noninvasive, genetic spatial capture-recapture.

  2. Eaton, M.J., A.K. Fuller, F.A. Johnson, M.P. Hare and R.C. Stedman. In Revision. Application of Decision Science to Resilience Management in Jamaica Bay. Chapter 10 in E. W. Sanderson, J. R. Waldman, W. Solecki and A. Parris, editors. Prospects for Resilience: Insights from New York City's Jamaica Bay. Island Press

  3. Bruce, S., M.P. Hare, et al. Submitted. Identification of a unique and genetically diverse strain of brook trout (Salvelinus fontinalis) in a remote Adirondack watershed. Canadian Journal of Fisheries and Aquatic Sciences.


Refereed


  1. Fuller, A., C. Sutherland, J. Royle and M.P. Hare. 2016. Estimating population density and space usage of American mink using spatial capture-recapture. Ecological Applications, in press.

  2. Eierman, L.E. and M.P. Hare. 2015. Reef specific patterns of gene expression plasticity in eastern oysters (Crassostrea virginica). Online Early, Journal of Heredity, special issue on phenotypic plasticity and evolution (esv057).

  3. Sutherland, J., F. Acker, J. Bloomfield, C. Boylen, D. Charles, R. Daniels, L. Eichler, J. Farrell, R. Feranec, M.P. Hare, S. Kanfoush, R. Preall, S. Quinn, H. Rowell, W. Schoch, W. Shaw, C. Siegfried, T. Sullivan, D. Winkler and S. Nierzwicki-Bauer. 2015. Brooktrout Lake Case Study - Biotic Recovery from Acid Deposition 20 Years after the 1990 Clean Air Act Amendments. Environmental Science and Technology 49(5): 2665–2674.

  4. Hare, M.P. and H. Borchardt-Wier. 2014. Microsatellite primers designed from pyrosequences to compare two subspecies of surf clam, Spisula solidissima. Conservation Genetics Resources, 6(4):1039-1041.

  5. Ilut, D.C., M.L. Nydam and M.P. Hare. 2014. Defining loci in restriction-based reduced representation genomic data from nonmodel species: Sources of bias and diagnostics for optimal clustering. BioMed Research International vol. 2014, Article ID 675158, 9 pages. doi:10.1155/2014/675158

  6. Eierman, L.E. and M.P. Hare. 2014. Transcriptomic analysis of candidate osmoregulatory genes in the eastern oyster Crassostrea virginica. BMC Genomics 15:503  doi:10.1186/1471-2164-15-503.

  7. Burford M.O., J. Scarpa, B.J. Cook, M.P. Hare. 2014. Local adaptation of a marine invertebrate with high dispersal potential: evidence from a reciprocal transplant experiment of the eastern oyster (Crassostrea virginica). Marine Ecology Progress Series, 505:161-175, DOI: 10.3354/meps10796

  8. Thompson, P., B. Rosenthal, and M.P. Hare. 2014. Microsatellite genotypes reveal some long distance gene flow in Perkinsus marinus, a major pathogen of eastern oysters. Journal of Shellfish Research. 33(1):195-206.

  9. Thompson, P., B. Rosenthal, and M.P. Hare. 2014. Hybridization between previously isolated ancestors may explain the persistence of exactly two ancient lineages in the genome of the oyster parasite Perkinsus marinus. Infection, Genetics and Evolution 24C(2014)167-176. DOI: 10.1016/j.meegid.2014.03.003.

  10. Anderson, J.D., W.J. Karel1, C.E. Mace, B.L. Bartram and M.P. Hare. 2014. Spatial genetic features of eastern oysters (Crassostrea virginica Gmelin) in the Gulf of Mexico: northward movement of a secondary contact zone. Ecology and Evolution 4(9), 1671-1685.

  11. Eierman, L.E. and M.P. Hare. 2013. Survival of oyster larvae in different salinities depends on source population within an estuary. Journal of Experimental Marine Biology and Ecology 449:61-68.

  12. Thompson, C.M., M.P. Hare, and S.M. Gallager. 2012. Semi-automated image-analysis for the identification of bivalve larvae from a Cape Cod estuary. Limnology & Oceanography Methods 10:538-554 (2012).

  13. Zhang, H. and M.P. Hare. 2012. Identifying and reducing AFLP genotyping error: An example of tradeoffs when comparing population structure in broadcast spawning versus brooding oysters. Heredity108(6):616-25.

  14. Kruse, I., M.P. Hare & A.H. Hines. 2011. Genetic relationships of the marine invasive crab parasite Loxothylacus panopaei: an analysis of DNA sequence variation, host specificity, and distributional range. Biological Invasions 14(3):701-715.

  15. Chen, G. and M.P. Hare. 2011. Cryptic diversity and comparative phylogeography of the estuarine copepod Acartia tonsa on the US Atlantic coast. Molecular Ecology 20(11): 2425–2441.

  16. Hare, M., L. Nunney, M. Schwartz, D. Ruzzante, M. Burford, R. Waples, K. Ruegg, and F. Palstra. 2011. Understanding and estimating effective population size for practical applications in marine species management. Conservation Biology 25(3):438-449.

  17. Thompson, P., B. Rosenthal, and M.P. Hare. 2011. An evolutionary legacy of sex and clonal reproduction in the protistan oyster parasite Perkinsus marinus. Infection, Genetics and Evolution 11(3): 598-609.

  18. Hare, M.P., J. Weinberg, O. Peterfalvy and M. Davidson. 2010. The “southern” surfclam (Spisula solidissima similis) found north of its reported range: A commercially harvested population in Long Island Sound, New York. Journal of Shellfish Research 29(4):799-807.

  19. Zhang, H., J. Scarpa, and M.P. Hare. 2010. Differential fertilization success between two populations of eastern oyster, Crassostrea virginica. Biological Bulletin 219:142-150.

  20. Carlsson, J., R.B. Carnegie, J.F. Cordes, M.P. Hare, T. Leggett, and K.S. Reece. 2008. Evaluating recruitment contribution of a selectively bred Crassostrea virginica oyster aquaculture line used in restoration efforts. Journal of Shellfish Research 27(5):1117-1124.

  21. Chen, G. and M.P. Hare. 2008. Cryptic ecological diversification of a planktonic copepod, Acartia tonsa. Molecular Ecology 17:1451-1468.

  22. Wangchuk, T., D.W. Inouye, and M.P. Hare. 2008. The emergence of an endangered species: Evolution and phylogeny of the Trachypithecus geei of Bhutan. International Journal of Primatology 29(3):565-582.

  23. Kruse, I. and M.P. Hare. 2007. Genetic diversity and expanding nonindigenous range of the rhizocephalan Loxothylacus panopaei parasitizing mud crabs in the western North Atlantic. J. Parasitology 93(3):575-582

  24. Murray, M. and M.P. Hare. 2006. Genomic evidence for divergent selection between Atlantic and Gulf of Mexico oysters, Crassostrea virginica. Molecular Ecology 15: 4229–4242.

  25. Hare, M. P., S. K. Allen Jr., P. Bloomer, M. D. Camara, M. D. Carnegie, J. Murfree, M. W. Luckenbach, D. Merritt, C. Morrison, K. T. Paynter, K. S. Reece, and C. G. Rose. 2006. A genetic test for recruitment enhancement in Chesapeake Bay oysters, Crassostrea virginica, after population supplementation with a disease tolerant strain. Conservation Genetics 7: 717–734.

  26. Rose, C. G., K. T. Paynter, and M. Hare. 2006. Isolation by distance in the eastern oyster, Crassostrea virginica, in Chesapeake Bay. J. Heredity 97(2):158-170.

  27. Gaines, C.A., M.P. Hare, S.E. Beck and H.C. Rosenbaum. 2005. Nuclear markers confirm taxonomic status and relationships among highly endangered and closely related right whale species. Proceedings of the Royal Society B 272:533-542.

  28. Hare, M.P., C. Guenther and W.F. Fagan. 2005. Nonrandom larval dispersal can steepen marine clines. Evolution 59:2509-2517.

  29. Hare, M.P. and J. Weinberg. 2005. Phylogeography of surf clams, Spisula solidissima, in the western North Atlantic based on mitochondrial and nuclear DNA sequences. Marine Biology 146:707-716.

  30. Robinson T.B., C.L. Griffiths, A. Tonin, P. Bloomer & M.P. Hare. 2005. Naturalized populations of Crassostrea gigas along the South African coast: distribution, abundance and population structure. Journal of Shellfish Research 24(2):443-450.

  31. Hare, M.P. and S.R. Palumbi. 2003. High intron sequence conservation across three mammalian orders suggests functional constaints. Molecular Biology and Evolution 20(6): 969-978.

  32. Wangchuk, T., D.W. Inouye and M.P. Hare. 2003. A new subspecies of golden langur (Trachypithecus geei) from Bhutan. Folia Primatol 74:104-108.

  33. Hare, M.P., F. Cipriano, and S.R. Palumbi. 2002. Genetic evidence on the demography of speciation in allopatric dolphin species. Evolution 56:804-816.

  34. Hare, M.P. 2001. Prospects for nuclear gene phylogeography. Trends in Ecology and Evolution, 16(12):700-706.

  35. Palumbi, S.R., F. Cipriano, and M.P. Hare. 2001. Predicting nuclear gene coalescence from mitochondrial data: The three-times rule. Evolution, 55:859-868.

  36. Hare, M.P., S.R. Palumbi, and C.A. Butman. 2000. Single-step species identification of bivalve larvae using multiplex polymerase chain reaction. Marine Biology, 137:953-961.

  37. Hare, M.P. and S.R. Palumbi. 1999. The accuracy of heterozygous base calling from diploid sequence and resolution of haplotypes using allele-specific sequencing. Molecular Ecology, 8:1750-1752.

  38. Hare, M.P. and J.C. Avise. 1998. Population structure in the American oyster as inferred by nuclear gene genealogies. Molecular Biology and Evolution 15:119-128.

  39. Orti, G., M.P. Hare, and J.C. Avise. 1997. Detection and isolation of nuclear haplotypes by PCR-SSCP. Molecular Ecology, 6:575-580.

  40. Hare, M.P. and J.C. Avise. 1996. Molecular genetic analysis of a stepped multilocus cline in the American oyster (Crassostrea virginica). Evolution, 50:2305-2315

  41. Hare, M.P., S.A. Karl, and J.C. Avise. 1996. The heterozygote deficiency phenomenon in marine bivalves: Lessons from the refinement of anonymous DNA markers. Molecular Biology and Evolution, 13:334-345.

  42. Hare, M.P. and G.F. Shields. 1992. Mitochondrial-DNA variation in the polytypic Alaskan Song Sparrow. Auk, 109(1):126-132.

  43. Foster, N.R. and M.P. Hare. 1990. Cephalopod remains from a Cuvier’s beaked whale (Ziphius cavirostris) stranded in Kodiak, Alaska. Northwestern Naturalist, 71:49-51.


Chapters
Hare, M.P. 1998. Using mitochondrial DNA gene trees and nuclear RFLPs to predict genealogical patterns at nuclear loci: Examples from the American oyster. Pp. 125-138 in (M.K. Uyenoyama and A. Haeseler, eds) Proceedings of the Trinational Workshop on Molecular Evolution, Duke University Publications Group, Durham NC.
Extension Publications
Hare, M.P. and Mead, J.G. 1987. Handbook for determination of adverse human-marine mannal interactions from necropsies. Northwest and Alaska Fisheries Center processed report 87-06, National Marine Fisheries Service, NOAA, Seattle, Washington. 35 pp.
Grants and Contracts
Active:


  1. New York Sea Grant: Identifying Genetic and Habitat Limitations to Cisco Restoration in Lake Ontario. PI Hare, co-PI Lars Rudstam, $209,692 total request over two years, 02/01/2016 – 01/31/2018.

  2. Atkinson Center for a Sustainable Future – Academic Venture Fund: Overcoming Barriers to Sustainable Oyster Restoration. PI Hare, co-PIs Katherine McComas, Jon Conrad, $120,740 total over two years (no indirect), 08/01/2015 – 07/31/2017.

  3. New York State Department of Environmental Conservation Return a Gift to Wildlife Fund – Environmental DNA monitoring of Amphibian Species and Pathogens. PI Elizabeth Bunting, co-PI Hare, $199,309, 04/01/2015 – 03/31/2019.

  4. USDA Hatch federal formula funds: Testing relative fitness of brook trout strains for restoration of reclaimed ponds. PI Hare with co-investigator Cliff Kraft, $24,200 over 3 years, 10/2014 – 09/2017

  5. USDA/NIFA Agriculture and Food Research Initiative, Animal Health and Production and Animal Products Priority Area: Sequencing of the Genome of the Eastern Oyster, Crassostrea virginica. PI Marta Gomez-Chiarri (University of Rhode Island), consultants: M. Hare, X. Guo, H. Poynton, K. Reece, D. Proestou, W. Warren, D. Rusch. 11/01/2014 – 10/31/16.

  6. U.S. Fish and Wildlife Service and NY State Dept. of Environmental Conservation Investigation of Mink Abundance Relative to Polychlorinated Biphenyl (PCB) Contamination within the Hudson River Drainage. Co-PI’s Angela Fuller and J. Andrew Royle; Genetics portion to M. Hare is $206,682 (not including IDC); 7/15/2011-6/30/2016.

  7. New York State Department of Environmental Conservation A non-invasive genetic approach to density estimation of fishers using spatial capture-recapture models. PI Angela Fuller; Genetics portion to M. Hare $165,274 (not including IDC); 2013-2017.


Awards pending and recent proposals not funded


  1. Texas Sea Grant pre-proposal: Demonstrating the Use of Hatchery-Produced Oysters for Restoration and Policy Initiation in Texas. John Scarpa PI, Hare co-PI with Bill Balboa. Submitted 03/2015, declined.

  2. Massachusetts Sea Grant pre-proposal: Oyster Spat-on-Shell Production for Sustainable Reefs – A Test of the Diversity Hypothesis. Scott Lindell PI, Hare co-PI with Anastasia Karplus and Matt Weeks, $98,000 for two years, $18,000 to Cornell. Submitted 03/2015, declined.

  3. Letter of Interest and Qualifications to National Park Service: Bivalve larval ecology in Jamaica Bay – if we restore it, will they come? Hare PI, $220,000 to Cornell, 2 co-PIs, total requested $480,629; submitted 04/2014, declined.

  4. USDA/NIFA Agriculture and Food Research Initiative, Animal Health and Production and Animal Products Priority Area: Reducing Genetic Bottlenecks and Inbreeding in Eastern Oyster Production. Hare PI, submitted 04/2014, declined.

  5. DOI/NFWF Superstorm Sandy Coastal Resiliency: Enhancing community and ecosystem resilience with restored oyster reefs in the NY/NJ Harbor Estuary. PI Jim Lodge (Hudson River Foundation), co-PIs Hare and 10 others, total Cornell budget $221,220; submitted 01/2014, declined.

  6. National Science Foundation, IGERT: Training Conservation Scientists of the Future: Genomics, Science Communication, and Biodiversity Conservation. K. Zamudio [Project Director], co-PIs: M. Hare, I. Lovette, A. Clark. Submitted July 2012, declined.

  7. Cornell Center for Comparative and Population Genomics Priming Grant, Spring 2011, not funded. Spring 2014, not funded.

  8. NSF Doctoral Dissertation Improvement Grant, L. Eierman co-PI, Spring 2011, not funded


Completed:


  1. AKRF, Inc. Consultants, for NY Thruway Authority

Genomic Analysis of Tappan Zee Oysters, $9,812, 10/2014 – 01/2015

  1. New York Sea Grant Genomic analysis of oyster dispersal and recruitment success February 2012– January 2014, NCE to 09/14, $248,213

  2. Hatch USDA

Surfclams in Long Island Sound: A recent range expansion facilitated by climate change? 2011-2013, $41,000.

  1. U.S. Fish & Wildlife Service, Coastal Program

Rebuilding oyster (Crassostrea virginica) reefs in the St. Lucie Estuary, Florida: Prioritizing reef restoration via identification of source populations

PI: M. Hare, Co-PI S. Geiger



10/1/2009 – 9/30/2012, $105,351 (NCE to 9/30/2013)

  1. American Genetics Association Funds to organize a Workshop on Nonmodel Genomics, Cornell University July 2012 – July 2013, P.I. Hare, with additional funding from the Cornell Center for Comparative and Population Genomics.

  2. Atkinson Center for a Sustainable Future – Academic Venture Fund Harnessing Genomics to Advance Biodiversity and Conservation Research M. Hare PI, co-PIs: K. Zamudio, A. Travis, I. Hewson July 2011 – July 2012, $71,884

  3. NSF Biological Oceanography Patterns of larval dispersal and post settlement selection shaping connectivity of oyster populations along an ecotone. PI: M. Hare , Co-PI J. Scarpa 2/1/07 – 1/31/11, no cost ext. to 1/31/12, $848,012

  4. Hatch USDA High Throughput Genetic Measurements of Larval Abundance in Support of Hard Clam Restoration in Great South Bay, NY. 2008– 2010, $50,000.

  5. Cornell Center for Comparative and Population Genomics Travel grant to attend American Genetics Association Conservation Genomics meeting. 2010, $750

  6. New York State Department of Environmental Conservation Estimates of genetic diversity in Temescamie Hybid strain and wild brook trout in New York. 2010, $11,753

  7. Cornell Center for Comparative Population Genomics Research Priming Grant : SNPs for the Masses: Developing a Method for SNP Discovery and Accurate Scoring in Heterozygous Genomes without a Full Reference Sequence. Dec. 2009, $5,000

  8. NOAA/SeaGrant, Oyster Disease Research Program Genetic rehabilitation and conservation of Chesapeake oysters using disease-tolerant oyster strains: A study of their recruitment and introgression potential. 6/2003 – 5/2005, $357,464, three co-PIs at two institutions, UMD portion for P.I. Hare $242,618.

  9. NOAA/Sea Grant, Oyster Disease Research Program Cooperative Regional Oyster Selective Breeding (CROSBreed) Project: Comprehensive strategy for genetic rehabilitation and conservation of oysters. 2001 – 2003, $600,004, with four co-PIs at two institutions, UMD subcontract to co-P.I. Hare, $245,384.

  10. Maryland Sea Grant A genetic analysis of oyster recruitment patterns in the Chesapeake Bay. 2002 – 2003, $84,999, PI: M. Hare, co-P.I. K. Paynter.

  11. University of Maryland General Research Board, Research support award 2001, $2500.

  12. U.S. Environmental Protection Agency An estimate of ancestral genetic diversity in right whales and elephant seals to test for the propensity to inbreeding depression. 1999 – 2001, $122,692, Hare co-P.I. with Steve Palumbi. Second year entirely at U. Maryland, P.I. Hare.


Fellowships, Prizes and Awards


  1. University of Maryland GRB Summer Research Award 2001




  1. Hrdy Biodiversity Fellowship, Harvard University 1999 – 2000




  1. NIH Training Grant Fellowship, University of Georgia 1993 – 1996



Invited Seminars
2015 Hudson River Foundation, New York, NY. Restoring Oysters Sustainably Requires Good Genes: Genomic Evidence from Delaware Bay and Hudson River. Link to video of seminar.
2013 SUNY Binghamton, Binghamton, NY. Restoring locally adapted eastern oysters, Crassostrea virginica, to New York Harbor Estuary; how 'local' must they be?
2012 Monterey Bay Aquarium Research Institute, Monterey, California

Biology Department, University of Rhode Island, Kingston, RI
2011 Zoology Department, University of Hawaii at Manoa



2010 Cornell Biological Field Station at Shackleton, Bridgeport, NY.
2009 Ecology & Evolutionary Biology Dept., Cornell University
2008 Isle of Shoals, Cornell University
2007 University of Southern California

National Conservation Training Center, Shepardstown, West Virginia
2006 Cornell University, Department of Natural Resources
2004 Horn Point Environmental Research Center, University of Maryland

UC Santa Barbara University of Southern California

Library of Congress, Washington D.C
2003 Center of Marine Biotechnology, Baltimore, MD

National Shellfisheries Association, New Orleans, biotech symposium


2002 University of Maryland, Baltimore County Lewes Marine Station, University of Delaware, Lewes, DE

Northeast Aquaculture Conference, Warwick, RI, biotech symposium


2001 Laboratory of Molecular Systematics, Smithsonian Institution

National Zoo, Smithsonian Institution

Georgetown University, Georgetown, DC
1999 San Diego State University, San Diego, CA
1998 Biology Department, University of California, Santa Barbara, CA Woods Hole Oceanographic Institute, Woods Hole, MA
1997 Lewes Marine Station, University of Delaware, Lewes, DE Trinational Workshop on Genealogical Inference, Munich, Germany
1995 Humanities Center, University of Georgia, Athens, GA

Biology Department, University of California, Santa Cruz, CA


Invited Symposium sPEAKER
05/09 Effective Population Size: Practical Applications in Marine Population Conservation & Management. International Marine Conservation Congress, George Mason U., Virginia
06/08 8th Larval Biology Symposium, Lisbon, Portugal
01/08 Symposium: Multidisciplinary approaches to larval dispersion and connectivity; Ocean Sciences 2008, Orlando, Florida
12/07 Oyster Management Plan Workshop, MD Dept. Natural Resources
4/05 University of Amsterdam, Netherlands, Structure @ Sea symposium
9/04 Jacques Monod Conference on host-parasite evol-ecology, Roscoff, France
CONFERENCE PRESENTATIONS (last three years)
2015 Hyma, K.E. (presenter), P. Barba, M. Wang, J. Londo, M.P. Hare, C. Acharya, S. Mitchell and Q. Sun. 2015. HetMappsS: Heterozygous mapping strategy for high resolution genotyping-by-sequencing markers. Plant and Animal Genomes, San Diego Jan. 10-14, 2015. Oral presentation.
Hare, M.P. 2015. Rebuilding a Diverse Oyster Population: Should we Plant Generalist or Specialist Oysters? Benthic Ecology Meeting, Quebec City, 4 March. Poster presentation.
Hare, M.P. 2015. Genomic and Transcriptomic Evidence for Functional Oyster Differentiation within Single Estuaries. National Shellfisheries Association, Monterey, CA, 23 March. Oral presentation.
Hare, M.P. 2015. Rebuilding a Diverse Oyster Population: Should we Plant Generalist or Specialist Oysters? National Shellfisheries Association, Monterey, CA, 23 March. Poster presentation.
2014 Eierman, L.E. and M.P. Hare (presenter). 2014. Genomic and Transcriptomic Evidence for Functional Oyster Differentiation within Single Estuaries. American Genetics Association Presidents’ Symposium, 26 July. Oral presentation.
Eierman, L.E. (presenter) and M.P. Hare. 2014. Population-specific patterns of osmotic response in larval and adult Crassostrea virginica. Society for the Study of Evolution annual meeting, Durham, NC, 29 June. Oral presentation.
Ferenz, G., S.B. Allred (presenters), M. Hare and C. Tse. New Science and Resilience Institute at Jamaica Bay, involving Cornell University/Extension. Poster at the Association of Natural Resources Extension Professionals, Sacramento, CA, May 2014. Poster.
Hare, M.P. (presenter) and N.K. Fletcher. Cryptic surf clams in New England waters – recent arrival or unrecognized native? Benthic Ecology, Jacksonville, FL, Mar. 20, 2014. Oral presentation.
Eierman, L.E. (presenter) and M.P. Hare. Population-specific patterns of osmotic response in larval and adult Crassostrea virginica. Benthic Ecology, Jacksonville, FL, Mar. 20, 2014. Oral presentation.
2013 Hare, M.P. (presenter) and L.E. Eierman. Using ‘local’ brood stock for restoration – how local is ‘local’ and what is the evidence for risks and benefits? National Shellfisheries Association, Nashville, KY, Feb. 23, 2013.
Ilut, D. (presenter), M.P. Hare. Restriction-based reduced representation genomic data in non-model organisms: sources of bias and diagnostics for optimal clustering. Plant Biology annual meeting, Providence RI, July 20, 2013.
SYNERGISTIC ACTVITIES


  1. Obtained funding for and organized two day workshop on Nonmodel Genomics, a practical methods training workshop funded by the American Genetics Association. Five instructors (including me), 10 teaching assistants, 70 students. Cornell University, July 23-24, 2013. See https://sites.google.com/site/nonmodelws/home




  1. Organized ‘Topical Lunch’ discussions on “Genetic Diversity Research at Cornell”, March 2009, and “Strengthening Interdisciplinary Graduate Education for Biodiversity Sciences at Cornell University”, June 2012, under auspices of Cornell Center for a Sustainable Future.




  1. Participant in working group to develop intrinsic organismal/population criteria for vulnerability to climate change. Two meetings, May 2009 at Cornell and October 2009 at BioSynC Center, Chicago Field Museum.




  1. Co-organizer of symposium at the International Marine Conservation Congress, May 2009: Effective Population Size: Practical Applications in Marine Population Conservation & Management.




  1. Co-organizer of symposium at Ocean Sciences 2008: Multidisciplinary approaches to larval dispersion and connectivity.




  1. Organized an NSF-funded symposium, “Empirical and Theoretical Advances in Studies of Effective Population Size”, May 10-11, 2002. Eight speakers and 50+ participants.



Teaching, Mentoring, and Advising
A. Courses taught during the past five years:
NTRES 2830 DNA, Genes and Genetic Diversity (4 cr., 40 students)

NTRES 4100 Advanced Conservation Biology (co-taught, 4 cr., 13-18 students)

NTRES 7283 Mol. Genet. Approaches to Study of Ecol. & Evol. (1 cr., 5-10 students)

BioEE 7600 Nonmodel Genomics (2 cr; co-taught, 5 – 15 students)

BioEE 1780 Evolution and Diversity (6 lectures, pop. gen., 2011, 2012)

BioSM 1780 Evolution and Diversity (6 lectures, pop. gen., 2013, 14, 15)

Visiting lecture(s) Invertebrate Diversity Seminar (2)

Intro to Conservation Biology (2)


B. Undergraduate advising
Name Major / Completion Date
Alexander Kumar Natural Resources / 2011

Kristina Cammen 5/2007, UMD Honors thesis

Sarah Beck 5/2002, UMD Honors thesis

Taylor Southard Natural Resources/ 2013

Victoria DiCamillo Natural Resources/ 2013

Jacqueline Wu Natural Resources/ 2013

Marilyn Wang Natural Resources/ 2014

Mary Fisher Natural Resources

Adam Romero Natural Resources

Lauren Sharp Natural Resources

Anna Brown Natural Resources

Thomas Butler Natural Resources

Joseph Chase Natural Resources

Claire Moreland-Ochoa Natural Resources

Melissa Call Environmental Science & Sustainability

John Imperato Environmental Science & Sustainability

Denis Tomazzi Environmental Science & Sustainability
C. Graduate student committees (* primary advisor; **co-chair; ^graduated):

Graduate Fields:

ZWC – Zoology and Wildlife Conservation

DNR – Natural Resources

EEB – Ecology and Evolutionary Biology
Alyssa Wetterau 2015-present** Ph.D. ZWC, Cornell

Yuka Kutsumi 2014-present* Ph.D. DNR, Cornell

Chaz Hyseni 2012-2013* Ph.D. DNR, Cornell

Catherine Sun 2010-present** Ph.D. DNR, Cornell

Cinnamon Mittan 2016-present Ph.D. EEB, Cornell

Martin Freehan 2014-present M.S. DNR, Cornell

Henry Kunerth 2015-present Ph.D. EEB, Cornell

Stephen Durham 2012-present Ph.D. EAS, Cornell

Nick Fletcher 2013-present Ph.D. EEB, Cornell

Margarita Lopez Uribe 2009-present Ph.D. ENT, Cornell

Laura Eierman 2007-present^ Ph.D. DNR, Cornell

Mallory Choudoir 2012-present Ph.D. Microbiology, Cornell

Sarah Kingman 2005-2012^ Ph.D. BEES, UMD

Maria Murray 2003-2012^ Ph.D. BIOL, UMD

Christine Mingione 2009-2011^ Ph.D. MIT/WHOI

Peter Thompson 2003-2010^ Ph.D. BEES, UMD

Gang Chen 2002-2009^ Ph.D. BEES, UMD

Colin Rose 2001-2008^ Ph.D. BIOL, UMD

Andreanna Welch 2006-2007^ Ph.D. BEES, UMD

Leanardo de Carvalho Oliveira 2006-2007 Ph.D. BIOL, UMD

Gwen Schlicta 2005-2007^ Ph.D. ENT, UMD

James Pettengill 2005-2007^ Ph.D. BEES, UMD

Jon Beadwell 2003-2007^ Ph.D. BEES, UMD

Rob Ahern 2004-2007^ Ph.D. ENT, UMD

Paula Rodgers 2004-2007^ Ph.D. BEES, UMD

Sky Lesnick 2004-2007^ Ph.D. BEES, UMD

Coren Milbury 2004-2007^ Ph.D. U.Del.

Safra Altman 2003-2007^ Ph.D. BEES, UMD

Joan West 2002-2007^ Ph.D. BEES, UMD

Kweli Powell 2002-2007 Ph.D. BEES, UMD

Holly Mortensen 2002-2007^ Ph.D. BEES, UMD

Brandie Smith 2000-2007 Ph.D. BEES, UMD

Jason South 2001-2006^ Ph.D. BEES, UMD

Kisi Bohn 2001-2005^ Ph.D. BEES, UMD

Ali Coffin 2001-2005^ Ph.D. NACS, UMD

Tashi Wangchuk 2001-2005^ Ph.D. BIOL, UMD

Cindy Hoover 2001-2003^ M.Sc. U.Del.

Elaine Pincus 2001-2002^ Ph.D. BEES, UMD

Eduardo Ezirik 2001-2002^ Ph.D. NACS, UMD
D. Postdoctoral Scholars Sponsored (current position)
Mariah Meek (Cornell University, Smith Fellow, current)

Dan Ilut (Cornell University, Plant Science Dept.)

Martha Burford (Asst. Prof., North Carolina State University)

Haibin Zhang (Sanya Inst. of Deep-Sea Sci. and Engin., Chinese Acad. of Sciences)

Inken Kruse (postdoc, GEOMAR Institute, Kiel, Germany)

Roldan Munoz (National Marine Fisheries Service)


E. Outreach and Extension Activities


  1. Assisted in planning Feb 1 2012 NYSDEC meeting on brook trout conservation and management. Presented research results; Genetics of Wild Brook Trout from
    Region 6 Stocked Ponds (coauthored with C. VanMaaren & L. Ressegui).




  1. Member, Oyster Steering Committee to develop workshop objectives toward revision of the Chesaeake Bay oyster management plan, 2007.




  1. Organized workshop on genetic considerations for oyster restoration and management, 07/03/07 in Colonial Beach, VA. Prepared summary of recommendations from workshop and distributed to stake holders.




  1. Judge for Oxon Hill High School Science and Technology Fair, February 3, 2007




  1. Discussion leader for Junior Science and Humanities annual Maryland symposium, March 10, 2006.




  1. Testified at U.S. House Resources Committee hearing on petition to list Crassostrea virginica as a threatened/endangered species, July 19, 2005.




  1. Presentation to NMFS/NOAA committee reviewing proposed listing of C. virginica under the ESA, Aug. 9, 2005.




  1. Invited participant to Sea Grant research planning and coordination meeting, July 21-22, 2004




  1. Invited participant at Sea Grant conference on "Oyster Research Restoration in US Coastal Waters", Aug. 19-20, 2003




  1. Invited participant at EPA-sponsored workshop on "Identifying and Prioritizing Research Required to Evaluate Ecological Risks, Benefits and Alternatives Related to the Potential Introduction of Crassostrea ariakensis to Chesapeake Bay", Dec. 2-3, 2003


SERVICE
A. Professional Service


  1. Associate editor, International Journal of Organic Evolution, January 2010 to 2013




  1. Panelist, NSF Evolutionary Genetics (2012), Biological Oceanography (2006)




  1. Ad hoc proposal reviews for NSF, NOAA NURP, Sea Grant, Smithsonian Institution, Conservation Biology Smith Fellowship Program and Atkinson Center for a Sustainable Future.




  1. Ad hoc manuscript reviews for journals: Molecular Biology and Evolution, Systematic Biology, Molecular Phylogenetics and Evolution, Molecular Ecology, Marine Biology, Trends in Ecology and Evolution, Heredity, Journal of Heredity, Conservation Genetics, Journal of Evolutionary Biology, Evolutionary Applications, Oceanography & Limnography, Journal of Marine Biology & Ecology




  1. Tenure Review letter (~one per year since 2013)


B. Service to Cornell University
Department Committees


  1. Executive Committee, Dept. of Natural Resources, 01/14 to present




  1. DNR Teaching and Curriculum Committee 5/08 – present




  1. Fernow Hall Renovation Arts Committee 10/12 – 10/14




  1. Co-chair, DNR seminar committee 05/12 – 05/13




  1. Co-chair, Adjunct Professor Nomination Criteria advisory committee 10/11 – 01/12




  1. DNR Seminar committee 06/10 – 05/11




  1. USGS Coop Unit Assistant Leader Search committee 06/10 – 09/10




  1. USGS Coop Unit Assistant Leader committee to draft job ad 02/10




  1. Subcommittee to Draft Conservation Biology program area definition 10/08 – 02/09:

College and University Service
Environmental Science & Sustainability Curriculum Committee, July 2012 to present, co-chair Jan. 2015 to present.
Cornell Representative to the Executive Committee for the Science and Resilience Institute at Jamaica Bay, 2012 to present.
Tenure Review Committee: apx. every other year since 2011
Marine Biology Curriculum Committee, October 2011 to present
Coordinator for Marine Biology Minor, October 2015 to present.
New York Marine Science Consortium Board of Governors, Cornell representative 2008 to present
Cornell University Public Safety Advisory Committee, Fall 2011 to Fall 2012


Matthew P. Hare C.V. Page


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