Performance Report for Cooperative Agreement No: na06oar4810163 for the Period from September 1, 2006 to August 31, 2012 University of Maryland Eastern Shore



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Fig 4. ISIIS example images. Images taken from both low latitude (clear waters) and high latitude (highly productive waters). From left to right: Larval flatfish (~6 mm TL), pelagic polychaete (Tomopteris sp. ~ 6 mm; note also in this figure a small larvacean and multiple diatoms), ctenophore, (~ 20 mm) larval wrasse (Thalassoma bifasciatum; ~ 7 mm)). Next row: pelagic shrimp (~ 15 mm), larval flatfish (Bothus sp. ~ 6 mm), larvacean (appendicularian – Oikiopleura sp.; ~ 2 mm), urchin pluteus (~1 mm), copepod (~ 2 mm).



6. Project Title: Role of larval ingress and estuarine conditions on recruitment for Atlantic croaker, spot, and summer flounder in Maryland's coastal lagoons

Thematic Area Addressed: Quantitative fisheries

Lead Scientist(s): Dr. Joseph Love (UMES); Dr. Gretchen Bath Martin (NOAA SEFSC); Mike Luisi (MDDNR)
LMRCSC Collaborator(s):

LMRCSC Research Student(s):

Planned Start Date: January 2009

Planned End Date: December 2009
Results of Project: Joseph Love left UMES and accepted a position at the Maryland Department of Natural Resources. Consequently, this project was not executed.

7. Project Title: Role of probiotic bacteria in protecting oyster larvae from pathogenic bacteria in hatchery culture

Project Description: The focus of the project was to use molecular tools to understand the effect of probiotic bacteria on the diversity of oyster larval microbial community in the presence and absence of pathogenic V. coralliilyticus. Candidate probiotic bacteria were also characterized using a variety of biochemical and molecular tools to begin elucidating the mechanism(s) involved in protection.

Thematic Area Addressed : Aquaculture

Lead Scientist(s): Dr. Hal Schreier, Dr. Eric Schott, COMB

NOAA Collaborator(s): Dr. Gary Wikfors and Ms. Diane Kapareiko, Northeast Fisheries Science Center, Milford

LMRCSC Collaborator(s): Dr. Dennis McIntosh, Delaware State University

LMRCSC Research Student(s): Ms. Oluchi Ukaegbu, and Ms. Jessica Rash, Delaware State University

Planned Start Date: June, 2009

Planned End Date: October 2009
Results of project:

Rash, J. M., D. McIntosh, D. Kapareiko, G. H. Wikfors, E. Schott, and H. J. Schreier. Biochemical and molecular analysis of bacteria used in protecting oyster larvae from pathogenic bacteria in hatchery culture. Fifth NOAA Center for Atmospheric Sciences (NCAS) Education and Science Forum, submitted.



Ukaegbu, O., D. McIntosh, D. Kapareiko, G. H. Wikfors, E. Schott, and H. J. Schreier. Examination of the microbial communities associated with oyster larvae treated with probiotic bacteria in the absence and presence of a bacterial pathogen. Fifth NOAA Center for Atmospheric Sciences (NCAS) Education and Science Forum, submitted.
How will results be incorporated into NOAA Fisheries operations? Results provide insight into the microbial communities associated with oyster larvae and the interaction of probiotic strains with these communities. They will be used to develop strategies for inhibiting pathogenic bacterial activity as well as determining the focus of further studies into the mechanisms of action of the probiotic bacteria.
How will results be incorporated into LMRCSC research and curriculum? The project was instrumental in providing both DSU students training in modern microbial molecular ecology techniques, approaches that are not readily available in standard lab classes.
8. Project Title: The Effect of Coded Wire Tags on the Growth of the Grass Shrimp Palaemonetes pugio in Mesocosms.

Project Description: As grass shrimp are an important food source for many commercially important species, their density can play an important role in determining habitat quality, which can be determined indirectly by assessing growth rates (Curran and Able 2002), and therefore whether areas could be essential fish habitats. Our objectives are to: determine the growth rate of isopod-parasitized and unparasitized grass shrimp Palaemonetes pugio in mesocosms at the NOAA lab in Charleston, SC and add this information to the model constructed on the impact of this sexually castrating parasite; and determine predation rates on grass shrimp by a fish predator. Results will be disseminated to local schools through the funded participants, including a teacher-intern who will design a K-12 activity for publication.

Thematic Area Addressed: Essential Fish Habitat

Lead Scientist(s): Dr. Mary Carla Curran, Dr. Paul Pennington, and Krystle Ludwig

NOAA Collaborator(s): Paul Pennington

LMRCSC Collaborator(s): Dr. Dionne Hoskins (NOAA Fisheries/Savannah State University)

LMRCSC Research Student(s): Krystle Ludwig (graduate student, SSU), Tracey Modeste (graduate student, SSU), Michael Partridge, (graduate student, SSU), Chris Williamson (undergraduate student, SSU), Joe LaBarre (undergraduate student, SSU), Sheena Corning (undergraduate student, SSU), Michele Sherman (undergraduate student, SSU), Krista Hoover (teacher-intern)

Planned Start Date: Fall 2008

Planned End Date: Sept 2010

Actual Start Date: 1 Oct 2008

Actual End Date: 30 Sept 2009
Planned and actual results of project: The objectives of this proposal were to: determine the effect of coded wire tags on growth rates of the grass shrimp Palaemonetes pugio; determine the growth rate of tagged grass shrimp in mesocosms at the NOAA laboratory in Ft. Johnson, SC; and determine whether the fish predator Fundulus heteroclitus prefers parasitized or unparasitized grass shrimp. In addition, we anticipate determining whether the growth rate of bopyrid-parasitized individuals is different than unparasitized individuals.

Tagged unparasitized grass shrimp growth (in length) was higher than tagged parasitized grass shrimp for all 3 mesocosms. Tagged unparasitized grass shrimp grew an average (±SD) of 19.02±14.17% in length and tagged parasitized grass shrimp lost an average of -0.56±12.79% in length. There was significant difference in growth in length (mm) between tagged unparasitized and tagged parasitized grass shrimp (p<0.0001). Tagged unparasitized grass shrimp gained an average (±SD) of 82.57±78.20% in weight. Tagged parasitized grass shrimp gained an average (±SD) of 2.71±43.45% in weight. There was a significant difference in weight (g) change between tagged unparasitized and tagged parasitized grass shrimp (p<0.0001). There were no significant differences in initial lengths (p=0.1746) or initial weights (p=0.5354) of untagged unparasitized grass shrimp and tagged unparasitized grass shrimp. There were also no significant differences in final lengths (p=0.1006) or final weights (p=0.05) of unparasitized grass shrimp and tagged unparasitized grass shrimp. Thus, the tag does not affect growth of grass shrimp.

For the predation study, trial 1 (of 3) was excluded due to the escape of some of the predators (mummichog Fundulus heteroclitus). The mummichog ate more tagged parasitized shrimp than any other treatment. We found that unparasitized grass shrimp average (±SD) percent survival was the highest (41.00±14.38%) while tagged parasitized grass shrimp average (±SD) percent survival was the lowest (17.00±5.03). There was a significant difference (p=0.0199) in survival of grass shrimp type when the control mesocosm of each trial was included. Further analysis revealed that unparasitized grass shrimp survival was significantly different than tagged parasitized grass shrimp survival (p=0.0388). There was no significant difference in survival between the other types of grass shrimp.

Undergraduate student Joe LaBarre conducted a small study to determine whether parasitized grass shrimp are more susceptible to predation by the mummichog Fundulus heteroclitis. He has found that shrimp behavior is more important than whether the shrimp was parasitized by Propopyrus pandalicola, but has found that mummichog preferred parasitize shrimp 59% of the time. Undergraduate student Sheena Corning conducted a small project on the effect of the parasite on starvation in grass shrimp and found that parasitized shrimp survived 2-4 days less than unparasitized shrimp. Undergraduate student Michele Sherman is conducting a study to determine the effect of removing this parasite from the shrimp and has seen an intermediate survivorship rate.

Monitoring study for shrimp densities in Georgia is continuing. To date, the highest egg loss due to sterilization was 335 eggs/m3. In a separate study, mortality was higher among non-gravid female P. pugio (32%) than gravid P. pugio (24%) when exposed to fipronil for 96 h. Parasitic sterilization, causing a loss of 21% of mean egg production, and exposure to fipronil may reduce the number of eggs available by as much as 45%, which may lead to a decline of this important prey item. The results of this project include: a M.S. thesis in May 2009 entitled “Effect of two potential stressors on the grass shrimp Palaemonetes pugio in southeastern Georgia;” another M.S. thesis anticipated in December 2009 entitled: “The effects of coded wire tags and the isopod parasite Probopyrus pandalicola on the growth and predation of grass shrimp Palaemonetes pugio”; and a third thesis is anticipated in May 2010 entitled “Behavioral effects of the parasite Probopyrus pandalicola on the swimming endurance and toxicity of fipronil to the grass shrimp Palaemonetes pugio. A publication describing our previous year’s research is in press and due out this fall entitled “Toxicity of synthetic pyrethroid insecticides to the grass shrimp, Palaemonetes pugio, parasitized with the bopyrid isopod, Probopyrus pandalicola.” This is the first publication in Dr. Curran’s career that was coauthored with an undergraduate student. A second grass shrimp K-12 activity is also in press this year entitled “Bringing scientific inquiry alive using real grass shrimp research. This was coauthored with a previous teacher-intern funded by LMRCSC and she is now one of the teachers who invites SSU faculty and students to come to her class and speak about research. Three other K-12 activities are in review and are coauthored by the teacher-intern from 2008-2009. All the above participants have been funded by LMRCSC or have received field assistance and use of supplies through LMRCSC funding.

The success of the year I efforts has encouraged Dr. Curran to pursue grass shrimp research as the major focus of her research efforts. Therefore, she has used the LMRCSC preliminary data as the background for her PI/coPI roles in the following 3 funded proposals: Collaborative: NSF New GK12: Building Ocean Literacy in a Coastal Community through Science Education and Estuarine Monitoring; NSF OEDG Collaborative Research: Enhancing Diversity in Geoscience Education through Coastal Research in a Port City (EDGE); and Department of Education Title VII Coastal Ocean and Underwater Research to Advance Graduate Education (COURAGE).


How will results be incorporated into NOAA Fisheries operations? Results from this research are relevant to the management, conservation, and protection of living marine resources, all of which are part of the NOAA mission. It was determined that grass shrimp, an important food resource for many commercial species, can be affected by parasites. In particular, growth is reduced in parasitized individuals. In addition, this isopod prevents the shrimp from reproducing, which in turn can affect shrimp populations and thereby impact habitat quality. Furthermore, a relatively novel technique (coded wire tags) was used to tag a small species. Although this technique has been used on larger species, this study shows that the tag can be used on smaller individuals, is retained, and does not affect shrimp growth.
How will results be incorporated into LMRCSC research and curriculum? This funded research is an integral part of Dr. Curran’s contribution to LMRCSC. Dr. Curran’s teacher-intern is incorporating her findings into K-12 curricula, as have past LMRCSC teacher interns. Dr. Curran is incorporating her field experience into her classroom teachings (Fish Ecology, Fisheries Oceanography, Marine Ecology, and Technical Writing) and both she and her students have spoken at local schools.
9. Project Title: The use of microsatellite DNA to evaluate US fishery management areas and effective population size of monkfish, Lophius americanus

Project Description: The monkfish (Lophius americanus) supports one of the most lucrative fisheries in the northwest Atlantic Ocean. Despite a paucity of life history, genetic or behavioral data, monkfish management in the US divides the species range into Northern and Southern Fishery Management Areas. However, little is known of stock structure, an understanding of which is critically important to population assessment. At present, the monkfish resource in each area is assessed as if it were a unit stock, with no exchange between areas. We propose to elucidate genetic variability in monkfish from the two management areas using a fine scale genetic approach, microsatellite DNA analysis. This study will provide critical information necessary for improving the management of this important commercial fishery.
Thematic Area Addressed: Quantitative Fisheries

Lead Scientist(s): Andrea Johnson

NOAA Collaborator(s): Anne Richards, Northeast Fisheries Science Center, Woods Hole

LMRCSC Collaborator(s): Dr Allen Place Professor UMBI COMB, Baltimore, MD 21202

LMRCSC Research Student(s): Belita Nguluwe (UMES)

Industry collaborators: F/V Mary K and F/V Endurance

Planned Start Date: January 2009

Planned End Date: December 2009

Actual Start Date: January 2009

Actual End Date: TBA
Planned and actual results of project: Monkfish samples were initially intended to be amplified using microsatellite primers; seven primers were designed by Martha O’ Sullivan: Monkfish (MF) 12, 14, 16, 18, 21, 27 and 28; of the seven only three primers worked (MF 12, 21 and 28) (Table 5). Upon sequencing these primers, the allele peaks were not clearly discernable. Mitochondrial DNA (MtDNA) primers were also used including cytochrome oxidase I (COX-I) and cytochrome b (CYTB) designed using the Primer 3 program; the sequences were obtained for NCBI gene bank. The COX-I primer yielded fairly desirable gel bands as well as allele peaks, this was used as a marker to determine if there were identifiable genetic groups and if they were related to the management areas.
Table 5. Monkfish microsatellite primers sequences designed by Martha O’ Sullivan (Fisheries Research Service Marine Laboratory, Aberdeen, Scotland)

Locus

 

Primer sequences










MF12




F: 5'-GACTGCTTCACCCACAGGAG-3'







R: 5'-TTCAGATTTTGTTTTCCTCAAGG-3'










MF13




F: 5'-TAGGGCAGGGTGTGAACTTTAC-3'







R: 5'-CTCTGCTGAGACCGTGACATAG-3'










MF14




F: 5'-GAAAAATTGGACAGATTGAGAGAG-3'







R: 5'-CTTTAAGTTGATGCAGAAAATTCC-3'










MF16




F: 5'-GCTGGTGAGGTTTTCAAAGTG-3'







R: 5'-AACACCATCCTCGCATATTCAC-3'










MF18




F: 5'-AGGGCAAGAGGTTAATAAGAGG-3'







R: 5'-TTAGTGTTTCAGGGTCTTGCTC-3'










MF21




F: 5'-TCTTTCAACGACAGGACAGGA-3'







R: 5'-AGAGGGGATGCTAATCTGCA-3'










MF27




F: 5'-CAAATGCCATTGGTTGAATTG-3'







R: 5'-TTTCAAGTCATTGCATGTAGCAG-3'










MF28




F: 5'-TGCTGAATTGCTGCTGTTATT-3'







R: 5'-GTGAACGTCTTTCTCCTCCAAC-3'

Monkfish samples will be collected from four nearshore (<50m depth) and four offshore (>100m depth) habitats in each of the management areas (Fig. 5). Because of the likelihood of long-distance movements of monkfish (Richards et al., 2008), all samples in the eight locations were collected within a two-week window. The samples were collected in 2009 by the Northeast Fisheries Science Center spring survey and the Cooperative Monkfish Survey (A. Richards, Chief Scientist). The Monkfish Survey cruises involved two charter vessels, one sampling in the NMA and another in the SMA. Additional samples were collected inshore from monkfish gillnetters participating in the Monkfish Set-Aside Program (2008/2009). Muscle and liver tissues from at least 50 fish per site were collected and frozen at -80C prior to processing. Whole genomic DNA was isolated using kits following manufacturer’s instructions (Zymo Research Corporation, Orange CA).



Methods: Monkfish (n=253) were collected by trawl-net from winter-spring 2009 from Gulf of Maine to Cape Hatteras, NC during the NOAA LMRCSC research cruise and the NEFSC Cooperative Monkfish Survey. Liver samples were preserved in 99% ethanol from individual fish for mitochondrial DNA (MtDNA) extraction. A DNA extraction and amplification protocol adapted by Dr. Place’s lab (UMBI-COMB) was used to process the monkfish samples collected by the NOAA and industry vessels.


Fig. 5. Sampling locations for monkfish collected aboard the R/V Delaware II (n = 13), F/V Mary K (n = 177) and the F/V Endurance (n = 63). Dotted line separates the NMA (n = 63) from the SMA (n = 190).
Results showed three genetic groups, but no spatial correlation to the management areas, suggesting no geographic isolation among the three groups. A 594bp region of mtDNA was obtained from MtDNA sequenced PCR products, which was then aligned and curated on Sequencher. CLC workbench was used to generate a phylogenetic tree and bootstraps were assigned to estimate precision.

Three genetic groups were observed which consisted of L.a. I, L.a. II and L.a III. The non-spatial correlation of the groups suggests that the examined monkfish population may not be a unit stock. Genetic assortment does not correspond to either management area, implying that the monkfish in US waters are not geographically isolated. Two outliers were observed in the phylogenetic tree which may be an indication of the presence of another species of monkfish (Lophius gastrophysus) that is primarily distributed south of Cape Hatteras, NC. This will be verified in subsequent studies. PCR reliability with universal eukaryotic primers will also be checked to determine if the eukaryotic primer results would be consistent with the COX-I tested samples in this study.



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