Publication list on hydroshear use (to 11 January 2017) 2017


Non-contiguous finished genome sequence and description of Paenibacillus senegalensis sp. nov



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Non-contiguous finished genome sequence and description of Paenibacillus senegalensis sp. nov.


Ajay Kumar Mishra, Jean-Christophe Lagier, Romain Rivet, Didier Raoult, Pierre-Edouard Fournier

Standards in Genomic Sciences, 10 October 2012; 7(1): 70-81.

http://www.ncbi.nlm.nih.gov/pmc/articles/PMC3577113/
Bioinformatic analysis of the Acinetobacter baumannii phage AB1 genome.

Peizhen Li, Biaobang Chen, Zhijian Song, Yulong Song, Yanmei Yang, Ping Ma, Huifeng Wang, Jun Ying, Ping Ren, Lei Yang, Guohui Gao, Shouguang Jin, Qiyu Bao, Hongjiang Yang

Gene, 10 October 2012; 507(2): 125-134.
Introduction to Nasalis larvatus Genome & Progress.

Mohd Hanif Ridzuan Mat Daud, Nur Aida Md Tamrin



Zoology Colloquium, 18 October 2012; PowerPoint presentation.

http://www.academia.edu/2492585/EkologiOrangBelanda2012
The genome of the obligate intracellular parasite Trachipleistophora hominis: new insights into microsporidian genome dynamics and reductive evolution.

Eva Heinz, Tom A. Williams, Sirintra Nakjang, Christophe J. Noël, Daniel C. Swan, Alina V. Goldberg, Simon R. Harris, Thomas Weinmaier, Stephanie Markert, Dörte Becher, Jörg Bernhardt, Tal Dagan, Christian Hacker, John M. Lucocq, Thomas Schweder, Thomas Rattei, Neil Hall, Robert P. Hirt, T. Martin Embley



PLoS Pathogens, 25 October 2012; 8(10): e1002979, 23 pp.

http://www.ncbi.nlm.nih.gov/pmc/articles/PMC3486916/
Method for sample analysis of aneuploidies in maternal samples.

Inventors: Richard P. Rava, David A. Comstock, Brian Kent Rhees, Anupama Srinivasan



US Patent Application: 2012/0270739 A1, Publication Date: 25 October 2012

http://www.freepatentsonline.com/y2012/0270739.html
미세캡슐화한 녹차 및 자몽종자 추출물이 Murine RAW 264.7 대식세포주의 항염증에 미치는 영향 비교

(A comparison of anti-inflammatory activities of green tea and grapefruit seed extract with those of microencapsulated extracts.)

전윤경, 김명환, 성필남, and 장문정. (Jun YK, Kim MH, Seong PN, Chang MJ)

한국영양학회지 (Korean J. Nutrition), October 2012; 45(5): 443-451.
High-Throughput Discovery of Mutations in Tef Semi-Dwarfing Genes by Next-Generation Sequencing Analysis.

Qihui Zhu, Shavannor M. Smith, Mulu Ayele, Lixing Yang, Ansuya Jogi, Srinivasa R. Chaluvadi, and Jeffrey L. Bennetzen.



Genetics, 1 November 2012; 192(3): 819-829.

http://www.ncbi.nlm.nih.gov/pmc/articles/PMC3522160/
An integrated map of genetic variation from 1,092 human genomes.

Gil A. McVean and The 1000 Genomes Project Consortium (about 100 names)



Nature, 1 November 2012; 491(7422): 56-65 + Supplemental material, 114 pp.

http://www.ncbi.nlm.nih.gov/pmc/articles/PMC3498066/
Diagnostic sequencing with small nucleic acid circles.

Inventors: Kevin Travers, Geoff Otto, Stephen Turner, Cheryl Heiner, and Congcong Ma.

United States Patent: US 8309330 B2, Publication Date: 13 November 2012;

https://www.google.com/patents/US8309330
Metagenomic and Biochemical Characterizations of Sulfur Oxidation Metabolism in Uncultured Large Sausage-Shaped Bacterium in Hot Spring Microbial Mats.

Satoshi Tamazawa, Kazuto Takasaki, Hideyuki Tamaki, Yoichi Kamagata, and Satoshi Hanada.



PLoS One, 21 November 2012; 7(11): e49793, 11 pp.

http://www.ncbi.nlm.nih.gov/pmc/articles/PMC3504083/
Genome sequence of the necrotrophic fungus Penicillium digitatum, the main postharvest pathogen of citrus.

Marina Marcet-Houben, Ana-Rosa Ballester, Beatriz de la Fuente, Eleonora Harries, Jose F. Marcos, Luis González-Candelas, and Toni Gabaldón.



BMC Genomics, 21 November 2012; 13(1): 646, 18 pp.

http://www.biomedcentral.com/1471-2164/13/646
Genômica comparativa de Xylella fastidiosa: diversidade do pangenoma e análise de genes de patogenicidade.

Wesley Oliveira de Santana



PhD Theses, 27 November 2012; Universidade de São Paulo, Brasil, 156 pp.

http://www.teses.usp.br/teses/disponiveis/46/46131/tde-10062013-105859/en.php

A physical, genetic and functional sequence assembly of the barley genome.

The International Barley Genome Sequencing Consortium


NatureVolume:, 29 November 2012; 491(7426): Pages:711–716 + Supplemental info, 83 pp.

http://www.cs.ucr.edu/~stelo/papers/nature12s.pdf

http://citeseerx.ist.psu.edu/viewdoc/download?doi=10.1.1.300.9981&rep=rep1&type=pdf
Paired-end sequencing of Fosmid libraries by Illumina.

Louise JS Williams, Diana G. Tabbaa, Na Li, Aaron M. Berlin, Terrance P. Shea, Iain MacCallum, Michael S. Lawrence, Yotam Drier, Gad Getz, Sarah K. Young, David B. Jaffe, Chad Nusbaum, and Andreas Gnirke



Genome Research, November 2012; 22(11): 2241-2249.

http://www.ncbi.nlm.nih.gov/pmc/articles/PMC3483553/pdf/2241.pdf
High-throughput discovery of mutations in tef semi-dwarfing genes by next-generation sequencing analysis.

Qihui Zhu, Shavannor M. Smith, Mulu Ayele, Lixing Yang, Ansuya Jogi, Srinivasa R. Chaluvadi, and Jeffrey L. Bennetzen.

Genetics, November 2012; 192(3): 819-829.

http://www.ncbi.nlm.nih.gov/pmc/articles/PMC3522160/
Massive gene acquisitions in Mycobacterium indicus pranii provide a perspective on mycobacterial evolution.

Vikram Saini, Saurabh Raghuvanshi, Jitendra P. Khurana, Niyaz Ahmed, Seyed E. Hasnain, Akhilesh K. Tyagi, and Anil K. Tyagi.



Nucleic Acids Research, November 2012; 40(21): 10832-10850.

http://nar.oxfordjournals.org/content/40/21/10832.full.pdf+html

Date published:


The nonribosomal peptide and polyketide synthetic gene clusters in two strains of entomopathogenic fungi in Cordyceps.

Wen-Jing Wang, Heiko Vogel, Yi-Jian Yao, and Liyan Ping.



FEMS Microbiology Letters, November 2012; 336(2): 89-97.

http://femsle.oxfordjournals.org/content/336/2/89
Application of metatranscriptomics to soil environments.

Lilia C. Carvalhais, Paul G. Dennis, Gene W. Tyson, and Peer M. Schenk.



Journal of Microbiological Methods, November 2012; 91(2): 246-251.

http://www.dennislab.net/uploads/2/0/5/8/20581472/carvalhais_et_al._2012._applying_metatranscriptomics_to_soil_environments.pdf
Next generation sequencing (NGS) technologies and their applications in omics-research.

Alisa Wilantho, Oranud Praditsup, Wanwisa Charoenchim, Supasak Kulawonganunchai, Anunchai Assawamakin, and Sissades Tongsima.



Thai Journal of Genetics, July-December 2012; 5(2): 104-129.
DNA encoding polypeptide involved in biosynthesis of herboxidiene.

Inventors: Kazuhiro Machida, Kaoru Okayama, Masashi Itoh, Asako Toyoda



European Patent: EP 2009/0758251 B1, Publication Date: 5 December 2012
Sequences of brachyspira, immunogenic composition, methods for preparation and use thereof.

Inventors: David J. Hampson, Tom La, Matthew I. Bellgard, Nyree D. Phillips



EU Patent Application: EP 2530087 A2, Publication Date: 5 December 2012

http://www.freepatentsonline.com/EP2530087.html
Methods and compositions for nucleic acid sample preparation.

Inventors: Pranav Patel, Keith Bjornson, Kevin Travers, Cheryl Heiner


US Patent Application: 2012/0309650 A1, Publication Date: 6 December 2012

http://www.freepatentsonline.com/y2012/0309650.html

The genomic and transcriptomic landscape of HeLa cells


Jonathan Landry

PhD Theses, 6 December 2012; Ruperto-Carola University, Heidelberg, Germany, 110 pp

http://archiv.ub.uni-heidelberg.de/volltextserver/14617/1/2012.09.26.final.thesis.pdf
Methods to Prepare DNA for Efficient Massive Sequencing.

Sverker Lundin



PhD Theses, 7 December 2012; Royal Institute of Technology, Stokholm, pp. 1-61

http://www.diva-portal.org/smash/get/diva2:570053/FULLTEXT01.pdf
Methods for nucleic acid mapping and identification of fine-structural-variations in nucleic acids.

Inventor: Si Lok



United States Patent: US 8329400 B2, Publication Date: 11 December 2012.

https://www.google.com/patents/US8329400
Method for increasing pathogen resistance in transgenic plants.

Inventors: Markus Frank, Patrick Schweizer, and Dimitar Douchkov.



United States Patent: US 8329988 B2, Publication Date: 11 December 2012.

https://www.google.com/patents/US8329988
Genomic sequence analysis and characterization of Sneathia amnii sp. nov.

Michael D. Harwich, Myrna G. Serrano, Jennifer M. Fettweis, João MP Alves, Mark A. Reimers, Gregory A. Buck, and Kimberly K. Jefferson.



BMC Genomics, 17 December 2012; 13(Suppl 8): S4, 15 pp.

http://www.ncbi.nlm.nih.gov/pmc/articles/PMC3535699/pdf/1471-2164-13-S8-S4.pdf
Genome-wide sequencing for the identification of rearrangements associated with Tourette syndrome and obsessive-compulsive disorder.

Sean D. Hooper, Anna CV Johansson, Christian Tellgren-Roth, Eva-Lena Stattin, Niklas Dahl, Lucia Cavelier, and Lars Feuk.



BMC Medical Genetics, 19 December 2012; 13(1): 123, 10 pp.

http://www.ncbi.nlm.nih.gov/pmc/articles/PMC3556158/
Non-contiguous finished genome sequence & description of Herbaspirillum massiliense sp. nov.

Jean-Christophe Lagier, Gregory Gimenez, Catherine Robert, Didier Raoult, Pierre-Edouard Fournier Standards in Genomic Sciences, 19 December 2012; 7(2): 200-209.

http://www.ncbi.nlm.nih.gov/pmc/articles/PMC3569391/
Non-contiguous finished genome sequence and description of Kurthia massiliensis sp. nov.

Veronique Roux, Khalid El Karkouri, Jean-Christophe Lagier, Catherine Robert, Didier Raoult Standards in Genomic Sciences, 19 December 2012; 7(2): 221-232.

http://www.ncbi.nlm.nih.gov/pmc/articles/PMC3569394/
Non-contiguous finished genome sequence & description of Brevibacterium senegalense sp. nov.

Sahare Kokcha, Dhamodharan Ramasamy, Jean-Christophe Lagier, Catherine Robert, Didier Raoult, Pierre-Edouard Fournier

Standards in Genomic Sciences, 19 December 2012; 7(2): 233-245.

http://www.ncbi.nlm.nih.gov/pmc/articles/PMC3569389/
Genome sequence and description of Aeromicrobium massiliense sp. nov.

Dhamodharan Ramasamy, Sahare Kokcha, Jean-Christophe Lagier, Thi-Thien Nguyen, Didier Raoult, Pierre-Edouard Fournier

Standards in Genomic Sciences, 19 December 2012; 7(2): 246-257.

http://www.ncbi.nlm.nih.gov/pmc/articles/PMC3569385/pdf/sigs.3306717.pdf
Non-contiguous finished genome sequence and description of Cellulomonas massiliensis sp. nov.

Jean-Christophe Lagier, Dhamodharan Ramasamy, Romain Rivet, Didier Raoult, Pierre-Edouard Fournier

Standards in Genomic Sciences, 19 December 2012; 7(2): 258-270.

http://www.ncbi.nlm.nih.gov/pmc/articles/PMC3569387/?report=classic
Genome sequence of the halotolerant bacterium Corynebacterium halotolerans, type strain YIM 70093T (= DSM 44683T)

Christian Rückert, Andreas Albersmeier, Arwa Al-Dilaimi, Karsten Niehaus, Rafael Szczepanowski, Jörn Kalinowski

Standards in Genomic Sciences, 19 December 2012; 7(2): 284-293

http://www.ncbi.nlm.nih.gov/pmc/articles/PMC3569386/pdf/sigs.3236691.pdf
Complete genome sequence of the motile actinomycete Actinoplanes missouriensis 431T (= NBRC 102363T)

Hideki Yamamura, Masayuki Hayakawa, Yasuo Ohnishi, Jun Ishikawa, Natsuko Ichikawa, Haruo Ikeda, Mitsuo Sekine, Takeshi Harada, Sueharu Horinouchi, Misa Otoguro, Tomohiko Tamura, Ken-ichiro Suzuki, Yasutaka Hoshino, Akira Arisawa, Youji Nakagawa, Nobuyuki Fujita, Masayuki Hayakawa

Standards in Genomic Sciences, 19 December 2012; 7(2): 294-303

http://www.ncbi.nlm.nih.gov/pmc/articles/PMC3569393/pdf/sigs.3196539.pdf
Non-contiguous finished genome sequence and description of Peptoniphilus grossensis sp. nov.

Ajay Kumar Mishra, Perrine Hugon, Catherine Robert, Didier Raoult, Pierre-Edouard Fournier Standards in Genomic Sciences, 19 December 2012; 7(2): 320-330.

http://www.ncbi.nlm.nih.gov/pmc/articles/PMC3569384/



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