Table list of genes found to be horizontally transferred between clades

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• Lineages Gene ID Gene set

Table S3. List of genes found to be horizontally transferred between clades. Genes in close proximity to repeat regions or mobile elements and plasmid genes are denoted by * and &, respectively. Lineages Gene ID Gene set Distance from mobile element (bp) Annotation C-I, C-III PAN002200 core Uncharacterized protein involved in formation of periplasmic nitrate reductase PAN003853 core F0F1-type ATP synthase, epsilon subunit (mitochondrial delta subunit) C-III, C-IV PAN001208 core Predicted membrane protein PAN001547 core Predicted periplasmic protein PAN002200 core Uncharacterized protein involved in formation of periplasmic nitrate reductase PAN002260 core Uncharacterized conserved protein PAN002841 core Uncharacterized protein conserved in bacteria PAN002891* core 33 Uncharacterized protein conserved in bacteria PAN003250 core Uncharacterized protein conserved in bacteria PAN003274 core Biotin carboxyl carrier protein PAN003288 core Factor for inversion stimulation Fis, transcriptional activator PAN003317 core DNA-directed RNA polymerase, alpha subunit/40 kD subunit PAN003406 core Shikimate kinase PAN003878 core Uncharacterized protein conserved in bacteria PAN003889 core Thiol-disulfide isomerase and thioredoxins PAN004055* core 30 Transcriptional regulator of met regulon PAN004097& core Preprotein translocase subunit SecE PAN004200 core Predicted membrane protein C-III, C-V PAN001208 core Predicted membrane protein PAN001547 core Predicted periplasmic protein PAN002891* core 33 Uncharacterized protein conserved in bacteria PAN003250 core Uncharacterized protein conserved in bacteria PAN003274 core Biotin carboxyl carrier protein PAN003288 core Factor for inversion stimulation Fis, transcriptional activator PAN003317 core DNA-directed RNA polymerase, alpha subunit/40 kD subunit PAN003406 core Shikimate kinase PAN003878 core Uncharacterized protein conserved in bacteria PAN004055* core 30 Transcriptional regulator of met regulon PAN004097& core Preprotein translocase subunit SecE C-IV, C-V PAN000050* core 17 Diadenosine tetraphosphatase and related serine/threonine protein phosphatases PAN000490* core 13 Predicted thioesterase PAN000542 core ABC-type uncharacterized transport system, ATPase component PAN000550 core Predicted ATPase PAN000563 core Malate/L-lactate dehydrogenases PAN000599* core 29 Phosphopantetheinyl transferase component of siderophore synthetase PAN000607 core ABC-type Fe3+-siderophore transport system, permease component PAN000612 core Isochorismate hydrolase PAN000656 core Rare lipoprotein B PAN000667 core Predicted metal-dependent hydrolase PAN000669 core 2-methylthioadenine synthetase PAN000690* core 5 Flavodoxins PAN000731 core Biopolymer transport proteins PAN000747* core 19 ABC-type molybdenum transport system, ATPase component/photorepair protein PhrA PAN000755 core 3-carboxymuconate cyclase PAN000886 core Permeases of the major facilitator superfamily PAN000931 core 3-hydroxymyristoyl/3-hydroxydecanoyl-(acyl carrier protein) dehydratases PAN000949 core Ni,Fe-hydrogenase I small subunit PAN000968* core 9 Uncharacterized component of anaerobic dehydrogenases PAN000988* core 211 High-affinity Fe2+/Pb2+ permease PAN001000* core 34 - PAN001010 core Predicted phosphatase homologous to the C-terminal domain of histone macroH2A1 PAN001022 core Cytochrome B561 PAN001075 core Transcriptional regulator PAN001089 core ABC-type spermidine/putrescine transport system, permease component I PAN001237 core Uncharacterized protein involved in cation transport PAN001246 core Nitrate reductase delta subunit PAN001362 core FOG: GGDEF domain PAN001415 core Sortase and related acyltransferases PAN001438 core Anaerobic dehydrogenases, typically selenocysteine-containing PAN001473 core NAD-dependent aldehyde dehydrogenases PAN001509 core Predicted permease PAN001531 core Adenosine deaminase PAN001542 core Predicted EndoIII-related endonuclease PAN001592 core - PAN001595 core Predicted permease PAN001626 core Threonyl-tRNA synthetase PAN001634 core Predicted phosphatase/phosphohexomutase PAN001640 core Alpha-galactosidases/6-phospho-beta-glucosidases, family 4 of glycosyl hydrolases PAN001646* core 46 NAD synthase PAN001659 core Uncharacterized conserved protein PAN001754 core Dihydroxyacid dehydratase/phosphogluconate dehydratase PAN001784 core FOG: CheY-like receiver PAN001792 core - PAN001819 core - PAN001842 core DNA-binding HTH domain-containing proteins PAN002008 core DNA gyrase inhibitor PAN002010 core Exonuclease I PAN002061 core Uridine kinase PAN002130* core 6 Uncharacterized membrane-associated protein PAN002142* core 60 ABC-type glucose/galactose transport system, permease component Directory: content -> suppl -> 2011 suppl -> Bondholder Concentration and Credit Risk: Evidence from a Natural Experiment suppl -> Background Information on Ilvaite 2011 -> Torres-Miranda et al. 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