Canyon conditions impact carbon flows in food webs of three sections of the Nazaré canyon



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Acknowledgements


This research was supported by the HERMES project (contract

GOCE-CT-2005-511234), funded by the European Commission’s Sixth Framework Programme under the priority “Sustainable Development, Global Change and Ecosystems”, and HERMIONE project (grant agreement n° 226354") funded by the European Community's Seventh Framework Programme (FP7/2007-2013). This is publication 5018 of the Netherlands Institute of Ecology (NIOO-KNAW), Yerseke.


References


Aller, J.Y., Aller, R.C., 2004. Physical disturbance creates bacterial dominance of benthic biological communities in tropical deltaic environments of the Gulf of Papua. Continental Shelf Research 24 (19), 2395-2416.

Allesina, S., Ulanowicz, R.E., 2004. Cycling in ecological networks: Finn's index revisited. Computational Biology and Chemistry 28 (3), 227-233.

Amaro, T., Bianchelli, S., Billett, D.S.M., Cunha, M.R., Pusceddu, A., Danovaro, R., 2010. The trophic biology of the holothurian Molpadia musculus: implications for organic matter cycling and ecosystem functioning in a deep submarine canyon. Biogeosciences 7 (8), 2419-2432.

Amaro, T., Witte, H., Herndl, G.J., Cunha, M.R., Billett, D.S.M., 2009. Deep-sea bacterial communities in sediments and guts of deposit-feeding holothurians in Portuguese canyons (NE Atlantic). Deep-Sea Research Part I-Oceanographic Research Papers 56 (10), 1834-1843.

Baguley, J.G., Montagna, P.A., Hyde, L.J., Rowe, G.T., 2008. Metazoan meiofauna biomass, grazing, and weight-dependent respiration in the Northern Gulf of Mexico deep sea. Deep-Sea Research Part II-Topical Studies in Oceanography 55 (24-26), 2607-2616.

Bianchelli, S., Gambi, C., Zeppilli, D., Danovaro, R., 2010. Metazoan meiofauna in deep-sea canyons and adjacent open slopes: A large-scale comparison with focus on the rare taxa. Deep Sea Research Part I: Oceanographic Research Papers 57 (3), 420-433.

Burdige, D.J., Berelson, W.M., Coale, K.H., McManus, J., Johnson, K.S., 1999. Fluxes of dissolved organic carbon from California continental margin sediments. Geochimica Et Cosmochimica Acta 63 (10), 1507-1515.

Canals, M., Puig, P., de Madron, X.D., Heussner, S., Palanques, A., Fabres, J., 2006. Flushing submarine canyons. Nature 444 (7117), 354-357.

Canfield, D.E., Jorgensen, B.B., Fossing, H., Glud, R., Gundersen, J., Ramsing, N.B., Thamdrup, B., Hansen, J.W., Nielsen, L.P., Hall, P.O.J., 1993. Pathways of organic-carbon oxidation in three continental-margin sediments. Marine Geology 113 (1-2), 27-40.

Danovaro, R., Bianchelli, S., Gambi, C., Mea, M., Zeppilli, D., 2009. alpha-, beta-, gamma-, delta- and epsilon-diversity of deep-sea nematodes in canyons and open slopes of Northeast Atlantic and Mediterranean margins. Marine Ecology-Progress Series 396, 197-209.

Danovaro, R., Dell'Anno, A., Corinaldesi, C., Magagnini, M., Noble, R., Tamburini, C., Weinbauer, M., 2008. Major viral impact on the functioning of benthic deep-sea ecosystems. Nature 454 (7208), 1084-U1027.

Danovaro, R., Manini, E., Dell'Anno, A., 2002. Higher abundance of bacteria than of viruses in deep Mediterranean sediments. Applied and Environmental Microbiology 68 (3), 1468-1472.

De Leo, F.C., Smith, C.R., Rowden, A.A., Bowden, D.A., Clark, M.R., 2010. Submarine canyons: hotspots of benthic biomass and productivity in the deep sea. Proceedings of the Royal Society B-Biological Sciences 277 (1695), 2783-2792.

de Stigter, H.C., Boer, W., Mendes, P., Jesus, C.C., Thomsen, L., van den Bergh, G.D., van Weering, T.C.E., 2007. Recent sediment transport and deposition in the Nazare Canyon, Portuguese continental margin. Marine Geology 246 (2-4), 144-164.

del Giorgio, P.A., Cole, J.J., 1998. Bacterial growth efficiency in natural aquatic systems. Annual Review of Ecology and Systematics 29, 503-541.

Epping, E., van der Zee, C., Soetaert, K., Helder, W., 2002. On the oxidation and burial of organic carbon in sediments of the Iberian margin and Nazare Canyon (NE Atlantic). Progress in Oceanography 52 (2-4), 399-431.

Fath, B.D., Patten, B.C., 1999. Review of the foundations of network environ analysis. Ecosystems 2 (2), 167-179.

Fauchald, K., Jumars, P.A., 1979. The diet of worms: A study of polychaete feeding guilds. Oceanography and Marine Biology: an Annual Review 39, 193-284.

Franco, M.A., Soetaert, K., Costa, M.J., Vincx, M., Vanaverbeke, J., 2008. Uptake of phytodetritus by meiobenthos using C-13 labelled diatoms and Phaeocystis in two contrasting sediments from the North Sea. Journal of Experimental Marine Biology and Ecology 362 (1), 1-8.

Garcia, R., Koho, K.A., De Stigter, H.C., Epping, E., Koning, E., Thomsen, L., 2007. Distribution of meiobenthos in the Nazare canyon and adjacent slope (western Iberian Margin) in relation to sedimentary composition. Marine Ecology-Progress Series 340, 207-220.

Garcia, R., Thomsen, L., 2008. Bioavailable organic matter in surface sediments of the Nazare canyon and adjacent slope (Western Iberian Margin). Journal of Marine Systems 74 (1-2), 44-59.

García, R., Van Oevelen, D., Soetaert, K., Thomson, L., De Stigter, H.C., Epping, E., 2008. Mixing intensity, deposition rates and organic content in two contrasting submarine canyons. Progress in Oceanography 76 (2), 192-215.

Geslin, E., Risgaard-Petersen, N., Lombard, F., Metzger, E., Langlet, D., Jorissen, F., 2010. Oxygen respiration rates of benthic foraminifera as measured with oxygen microsensors. Journal of Experimental Marine Biology and Ecology doi:10.1016/j.jembe.2010.10.011.

Ginger, M.L., Billett, D.S.M., Mackenzie, K.L., Kiriakoulakis, K., Neto, R.R., Boardman, D.K., Santos, V., Horsfall, I.M., Wolff, G.A., 2001. Organic matter assimilation and selective feeding by holothurians in the deep sea: some observations and comments. Progress in Oceanography 50 (1-4), 407-421.

Glud, R.N., Middelboe, M., 2004. Virus and bacteria dynamics of a coastal sediment: Implications for benthic carbon cycling. Limnology and Oceanography 49 (6), 2073-2081.

Guilini, K., Van Oevelen, D., Soetaert, K., Middelburg, J.J., Vanreusel, A., 2010. Nutritional importance of benthic bacteria for deep-sea nematodes from the Arctic ice margin: Results of an isotope tracer experiment. Limnology and Oceanography 55 (5), 1977-1989.

Heip, C.H.R., Duineveld, G., Flach, E., Graf, G., Helder, W., Herman, P.M.J., Lavaleye, M., Middelburg, J.J., Pfannkuche, O., Soetaert, K., Soltwedel, T., de Stigter, H., Thomsen, L., Vanaverbeke, J., de Wilde, P., 2001. The role of the benthic biota in sedimentary metabolism and sediment-water exchange processes in the Goban Spur area (NE Atlantic). Deep-Sea Research Part II-Topical Studies in Oceanography 48 (14-15), 3223-3243.

Hendriks, A.J., 1999. Allometric scaling of rate, age and density parameters in ecological models. Oikos 86 (2), 293-310.

Ingels, J., Billett, D.S.M., Van Gaever, S., Vanreusel, A., 2011. An insight into the feeding ecology of deep-sea canyon nematodes — Results from field observations and the first in-situ 13C feeding experiment in the Nazaré Canyon. Journal of Experimental Marine Biology and Ecology 396, 185–193.

Ingels, J., Kiriakoulakis, K., Wolff, G.A., Vanreusel, A., 2009. Nematode diversity and its relation to the quantity and quality of sedimentary organic matter in the deep Nazare Canyon, Western Iberian Margin. Deep-Sea Research Part I-Oceanographic Research Papers 56 (9), 1521-1539.

Koho, K.A., Garcia, R., de Stigter, H.C., Epping, E., Koning, E., Kouwenhoven, T.J., van Der Zwaan, G.J., 2008. Sedimentary labile organic carbon and pore water redox control on species distribution of benthic foraminifera: A case study from Lisbon-Setubal Canyon (southern Portugal). Progress in Oceanography 79 (1), 55-82.

Kones, J.K., Soetaert, K., van Oevelen, D., Owino, J.O., 2009. Are network indices robust indicators of food web functioning? a Monte Carlo approach. Ecological Modelling 220, 370–382.

Kones, J.K., Soetaert, K., van Oevelen, D., Owino, J.O., Mavuti, K., 2006. Gaining insight into food webs reconstructed by the inverse method. Journal of Marine Systems 60 (1-2), 153-166.

Masson, D.G., Huvenne, V.A., De Stigter, H., Wolff, G.A., Kiriakoulakis, K., Arzola, R.G., Blackbird, S.J., 2010. Efficient burial of carbon in a submarine canyon. Geology 38 (9), 831-834

Masson, D.G., Huvenne, V.A.I., Smeed, D.A., Arzola, R.G., Submitted, this issue. Sedimentary processes in the middle Nazaré Canyon: the importance of small-scale heterogeneity in defining the large-scale canyon environment.

Middelboe, M., Glud, R.N., 2006. Viral activity along a trophic gradient in continental margin sediments off central Chile. Marine Biology Research 2 (1), 41-51.

Middelburg, J.J., Soetaert, K., Herman, P.M.J., 1997. Empirical relationships for use in global diagenetic models. Deep-Sea Research Part I-Oceanographic Research Papers 44 (2), 327-344.

Moens, T., Vanhove, S., De Mesel, I., Kelemen, B., Janssens, T., Dewicke, A., Vanreusel, A., 2007. Carbon sources of Antarctic nematodes as revealed by natural carbon isotope ratios and a pulse-chase experiment. Polar Biology 31 (1), 1-13.

Moodley, L., Middelburg, J.J., Boschker, H.T.S., Duineveld, G.C.A., Pel, R., Herman, P.M.J., Heip, C.H.R., 2002. Bacteria and Foraminifera: Key players in a short-term deep-sea benthic response to phytodetritus. Marine Ecology Progress Series 236, 23-29.

Moodley, L., Steyaert, M., Epping, E., Middelburg, J.J., Vincx, M., van Avesaath, P., Moens, T., Soetaert, K., 2008. Biomass-specific respiration rates of benthic meiofauna: Demonstrating a novel oxygen micro-respiration system. Journal of Experimental Marine Biology and Ecology 357 (1), 41-47.

Nodder, S.D., Pilditch, C.A., Keith Probert, P., Hall, J.A., 2003. Variability in benthic biomass and activity beneath the Subtropical Front, Chatman Rise, SW Pacific Ocean. Deep-Sea Research Part I-Oceanographic Research Papers 50, 959-985.

Piepenburg, D., Blackburn, T.H., Vondorrien, C.F., Gutt, J., Hall, P.O.J., Hulth, S., Kendall, M.A., Opalinski, K.W., Rachor, E., Schmid, M.K., 1995. Partitioning of benthic community respiration in the Arctic (northwestern Barents Sea). Marine Ecology-Progress Series 118 (1-3), 199-213.

Pusceddu, A., Bianchelli, S., Canals, M., Sanchez-Vidal, A., Durrieu De Madron, X., Heussner, S., Lykousis, V., de Stigter, H., Trincardi, F., Danovaro, R., 2010. Organic matter in sediments of canyons and open slopes of the Portuguese, Catalan, Southern Adriatic and Cretan Sea margins. Deep Sea Research Part I: Oceanographic Research Papers 27, 441-457.

Pusceddu, A., Bianchelli, S., Canals, M., Sanchez-Vidal, A., Durrieu De Madron, X., Heussner, S., Lykousis, V., de Stigter, H., Trincardi, F., Danovaro, R., In Press. Organic matter in sediments of canyons and open slopes of the Portuguese, Catalan, Southern Adriatic and Cretan Sea margins. Deep Sea Research Part I: Oceanographic Research Papers In Press, Corrected Proof.

R Development Core Team, 2008. R: A language and environment for statistical computing. R Foundation for Statistical Computing, Vienna, Austria.

Rabouille, C., Caprais, J.C., Lansard, B., Crassous, P., Dedieu, K., Reyss, J.L., Khripounoff, A., 2009. Organic matter budget in the Southeast Atlantic continental margin close to the Congo Canyon: In situ measurements of sediment oxygen consumption. Deep-Sea Research Part II-Topical Studies in Oceanography 56 (23), 2223-2238.

Rex, M.A., Etter, R.J., Morris, J.S., Crouse, J., McClain, C.R., Johnson, N.A., Stuart, C.T., Deming, J.W., Thies, R., Avery, R., 2006. Global bathymetric patterns of standing stock and body size in the deep-sea benthos. Marine Ecology-Progress Series 317, 1-8.

Rowe, G.T., Wei, C.L., Nunnally, C., Haedrich, R., Montagna, P., Baguley, J.G., Bernhard, J.M., Wicksten, M., Ammons, A., Briones, E.E., Soliman, Y., Deming, J.W., 2008. Comparative biomass structure and estimated carbon flow in food webs in the deep Gulf of Mexico. Deep-Sea Research Part II-Topical Studies in Oceanography 55 (24-26), 2699-2711.

Ruhl, H.A., 2007. Abundance and size distribution dynamics of abyssal epibenthic megafauna in the northeast Pacific. Ecology 88 (5), 1250-1262.

Soetaert, K., Franco, M., Lampadariou, N., Muthumbi, A., Steyaert, M., Vandepitte, L., vanden Berghe, E., Vanaverbeke, J., 2009. Factors affecting nematode biomass, length and width from the shelf to the deep sea. Marine Ecology-Progress Series 392, 123-132.

Soetaert, K., Van den Meersche, K., Van Oevelen, D., 2008. limSolve: Solving linear inverse models. R package version 1.3.

Soetaert, K., Van Oevelen, D., 2008. LIM: Linear Inverse Model examples and solution methods. R package version 1.2.

Soetaert, K., Van Oevelen, D., 2009. Modeling food web interactions in benthic deep-sea ecosystems: a practical guide. Oceanography 22 (1), 130-145.

Soetaert, K., Vanaverbeke, J., Heip, C., Herman, P.M.J., Middelburg, J.J., Sandee, A., Duineveld, G., 1997. Nematode distribution in ocean margin sediments of the Goban Spur (northeast Atlantic) in relation to sediment geochemistry. Deep-Sea Research Part I-Oceanographic Research Papers 44 (9-10), 1671-1683.

Tenore, K.R., 1982. Comparison of the ecological energetic of the polychaetes Capitella capitata and Nereis succinea in experimental systems receiving similar levels of detritus. Journal of Sea Research 16, 46-54.

Tobor-Kaplon, M.A., Holtkamp, R., Scharler, U.M., Doroszuk, A., Kuenen, F.J.A., Bloem, J., De Ruiter, P.C., 2007. Evaluation of information indices as indicators of environmental stress in terrestrial soils. Ecological Modelling 208 (1), 80-90.

Tyler, P., Amaro, T., Arzola, R., Cunha, M.R., de Stigter, H., Gooday, A., Huvenne, V., Ingels, J., Kiriakoulakis, K., Lastras, G., Masson, D., Oliveira, A., Pattenden, A., Vanreusel, A., Van Weering, T., Vitorino, J., Witte, U., Wolff, G., 2009. Europe's Grand Canyon Nazare Submarine Canyon. Oceanography 22 (1), 46-57.

Ulanowicz, R.E., 2004. Quantitative methods for ecological network analysis. Computational Biology and Chemistry 28 (5-6), 321-339.

Van den Meersche, K., Soetaert, K., Van Oevelen, D., 2009. xsample(): an R function for sampling linear inverse problems. Journal of Statistical Software 30 (1), 1-15.

Van Duyl, F.C., Kop, A.J., 1994. Bacterial production in North Sea sediments: Clues to seasonal and spatial variations. Marine Biology 120, 323-337.

Van Oevelen, D., Duineveld, G.C.A., Lavaleye, M.S.S., Mienis, F., Soetaert, K., Heip, C.H.R., 2009. The cold-water coral community as hotspot of carbon cycling on continental margins: a food web analysis from Rockall Bank (northeast Atlantic). Limnology and Oceanography 54 (6), 1829–1844.

Van Oevelen, D., Middelburg, J.J., Soetaert, K., Moodley, L., 2006a. The fate of bacterial carbon in an intertidal sediment: Modeling an in situ isotope tracer experiment. Limnology and Oceanography 51 (3), 1302-1314.

Van Oevelen, D., Soetaert, K., Middelburg, J.J., Herman, P.M.J., Moodley, L., Hamels, I., Moens, T., Heip, C.H.R., 2006b. Carbon flows through a benthic food web: Integrating biomass, isotope and tracer data. Journal of Marine Research 64 (3), 1-30.

Van Oevelen, D., Van den Meersche, K., Meysman, F., Soetaert, K., Middelburg, J.J., Vézina, A.F., 2010. Quantitative reconstruction of food webs using linear inverse models. Ecosystems 13, 32–45.

Vetter, E.W., Dayton, P.K., 1999. Organic enrichment by macrophyte detritus, and abundance patterns of megafaunal populations in submarine canyons. Marine Ecology-Progress Series 186, 137-148.

Vézina, A.F., Berreville, F., Loza, S., 2004. Inverse reconstructions of ecosystem flows in investigating regime shifts: Impact of the choice of objective function. Progress in Oceanography 60 (2-4), 321-341.

Vézina, A.F., Pahlow, M., 2003. Reconstruction of ecosystem flows using inverse methods: how well do they work? Journal of Marine Systems 40, 55-77.

Wieser, W., 1953. Die Beziehung zwischen Mundhöhlengestalt, Ernährungsweise und Vorkommen bei freilebenden marinen Nematoden. Eine skologisen-morphologische studie. Arkiv für Zoologie 4, 439-484.

Wigham, B.D., Galley, E.A., Smith, C.R., Tyler, P.A., 2008. Inter-annual variability and potential for selectivity in the diets of deep-water Antarctic echinoderms. Deep-Sea Research Part II-Topical Studies in Oceanography 55 (22-23), 2478-2490.

Wigham, B.D., Hudson, I.R., Billett, D.S.M., Wolff, G.A., 2003. Is long-term change in the abyssal Northeast Atlantic driven by qualitative changes in export flux? Evidence from selective feeding in deep-sea holothurians. Progress in Oceanography 59 (4), 409-441.

Witbaard, R., Duineveld, G.C.A., Kok, A., van der Weele, J., Berghuis, E.M., 2001. The response of Oneirophanta mutabilis (Holothuroidea) to the seasonal deposition of phytopigments at the porcupine Abyssal Plain in the Northeast Atlantic. Progress in Oceanography 50 (1-4), 423-441.

Witte, U., Wenzhofer, F., Sommer, S., Boetius, A., Heinz, P., Aberle, N., Sand, M., Cremer, A., Abraham, W.R., Jorgensen, B.B., Pfannkuche, O., 2003. In situ experimental evidence of the fate of a phytodetritus pulse at the abyssal sea floor. Nature 424 (6950), 763-766.

Woulds, C., Andersson, J.H., Cowie, G.L., Middelburg, J.J., Levin, L.A., 2009. The short-term fate of organic carbon in marine sediments: Comparing the Pakistan margin to other regions. Deep-Sea Research Part II-Topical Studies in Oceanography 56 (6-7), 393-402.

Woulds, C., Cowie, G.L., Levin, L.A., Andersson, J.H., Middelburg, J.J., Vandewiele, S., Lamont, P.A., Larkin, K.E., Gooday, A.J., Schumacher, S., Whitcraft, C., Jeffreys, R.M., Schwartz, M., 2007. Oxygen as a control on seafloor biological communities and their roles in sedimentary carbon cycling. Limnology and Oceanography 52 (4), 1698-1709.






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