Chapter 1 Introduction 1 General Introduction



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Equilibration. In order to properly sample the canonical ensemble, the system must be thermally equilibrated. Thermal equilibration is often done by instantly exciting the system to the desired temperature with a random excitation vector. This is followed by thermostated dynamics for at least a few picoseconds thereby ensuring that all vibrational modes are excited to an equal extent. There are two problems with this approach in the Car-Parrinello scheme. First, an immediate pulse of kinetic energy in order to excite the nuclei to the desired temperature is likely to dislodge the wave function from the Born-Oppenheimer surface. Second, long periods of equilibration are expensive with ab initio molecular dynamics. For these reasons we take a modified approach to equilibration. First, the nuclei are excited by a series of slowly growing pulses. Each of the excitation vectors is chosen to be orthogonal to the already excited modes, thereby ensuring an evenly distributed thermal excitation. This is followed by a short period of thermostated dynamics. We have found this approach more efficiently achieves a thermally equilibrated system than the convention method.

4.7 Mass Rescaling

Since the configurational averages in classical molecular dynamics do no depend on the masses of the nuclei,150 a common technique to increase the sampling rate involves replacing the true masses with more convenient ones. Since nuclear velocities scale with m-1/2, smaller masses move faster and therefore potentially sample configuration space faster. As a result, the masses of the heavy atoms can be scaled down in order to increase sampling. For example, we commonly rescale the masses of C, N and O in our simulations from 12, 14 and 16 amu, respectively, to 2 amu. There is a limit to the mass reduction, because at some point the nuclei move so fast that the simulation time step has to be reduced. At this point there is no gain in reducing the masses further because if the time step has to be shortened, we have to perform more time steps to achieve the same amount of sampling. It is for this reason, we generally scale our hydrogen masses up from 1 amu to 1.5 amu or higher in order to use a larger time step.



4.8. Ab Initio Molecular Dynamics Study of Olefin Polymerization Chemistry.

Recently, we have applied PAW to examine the chemistry of a Ti(IV) metallocene olefin polymerization catalyst.121,133-135 In studying this system we have found that ab initio molecular dynamics can be used to (i) determine the time scales of processes, (ii) efficiently explore complicated free energy surfaces in a synergistic fashion with traditional static methods, (iii) find new reactions, and (iv) to provide a general way of determining finite temperature free energy barriers.






Figure 4.2. Constrained Geometry Catalyst (CGC).

Single-site catalyzed olefin polymerization technology is expected to revolutionize the immense polyolefin industry. Amongst the first single-site catalysts to have been commercialized151 are the mono Cp "constrained-geometry" catalysts of the form (CpSiR'2NR)Ti-X2 where X=CH3, Cl (e.g. Figure 4.2). For most group 4 metallocenes, the catalytic resting state is believed to be a cationic metal alkyl complex, e.g. (CpSiR'2NR')Ti-R+, where R represents the growing alkyl chain. Commencing from the resting state Ti-alkyl complex, Figure 4.3 depicts the assumed and well-established Cossée-Arlman mechanism for the chain growth. Addition of olefin to the resting state forms an olefin -complex. From the -complex a four centered transition state is formed whereby the olefin inserts into the Ti-C bond. The initial or kinetic product is a -agostic Ti-alkyl complex. In "static" studies53 of similar bis-Cp zirconocene catalysts, the initial -agostic complex is believed to rapidly rearrange to the more favorable -agostic resting state complex. Olefin uptake and insertion therefore likely commences from the -agostic complex as opposed to the -agostic complex. Therefore, to study the insertion process, it is important to know the structure of the resting state.




Figure 4.3. Cossée-Arlman152,153 mechanism for chain propagation in the Constrained Geometry single-site olefin polymerization catalyst.

Computational Details. The reported "static" density functional calculations were all carried out by the ADF program system version 1.1.3.36,39,96,97 For the description of the electronic configuration (3s, 3p, 3d, 4s, and 4p) of titanium we used an uncontracted triple- STO basis set. 114,115 For carbon (2s, 2p) and hydrogen (1s) a double- STO basis, augmented with a single 3d or 2p polarization function respectively, was applied. No polarization functions were employed for carbon and hydrogen atoms on the Cp ring. The 1s22s22p63s2 configuration on Ti, the 1s22s22p2 configuration on Si and the 1s2 shell on C and N were assigned to the core and treated with the frozen core approximation.38 In order to fit the molecular density and to represent Coulomb and exchange potentials accurately a set of auxiliary s, p, d, f, and g STO functions,116 centered on all nuclei was used in every SCF cycle. Energy differences were calculated by including the local exchange-correlation potential by Vosko117 et al. with Becke's103 nonlocal exchange corrections and Perdew's104,105 nonlocal correlation correction. The spin restricted formalism was used for all calculations. Geometries were optimized without including nonlocal corrections. In a previous publication, we have shown that in systems such as the one under investigation here the energetics derived by such a procedure deviate by less than 2.4 kcal/mol from energetics obtained by nonlocal geometry optimization.53 All saddle point determinations were initialized by a linear transit search from reactant to product along an assumed reaction coordinate where all degrees of freedom were optimized except for the reaction coordinate which was frozen for each step. Transition states were then fully optimized and validated by a frequency calculation where the backbone (Cp, silane and amido groups) of the constrained geometry catalyst was frozen. This approach has been justified in reference 121.

The details of the Car-Parrinello PAW41 are as follows. The wave function was expanded in plane waves up to an energy cutoff of 30 Ry. We employed the frozen core approximation for the [Ar] core on Ti, the [Ne] core for Si, and the [He] core of the first row elements. Periodic boundary conditions were used, with a unit cell spanned by the lattice vectors ([0.0 8.5 8.5] [8.5 0.0 8.5] [8.5 8.5 0.0]) (Å units). All simulations were performed using the local density approximation in the parametrization of Perdew and Zunger,118 with gradient corrections due to Becke103 and Perdew.104,105 Electrostatic interactions between neighboring unit cells was minimized by the charge isolation scheme of Blöchl142 as discussed in Section 4.4. A temperature of 300 K was maintained for all simulations by a Nosé thermostat.147,148 The fictitious kinetic energy of the electrons was contained near the Born-Oppenheimer surface by a Nosé thermostat.149 In order to span large portions of configuration space in a minimum of time, the true masses of the nuclei were rescaled to 5.0 (Ti), 2.0 (Si, N and C) and 1.5 (H) atomic mass units. Together with an integration time step of 7 a.u. (≈0.17 fs), this choice ensures good energy conservation during the dynamics simulation without computational overhead due to heavy atomic nuclei. Since the nuclear velocities scale with m-1/2 the sampling is sped up by a factor of 1.5-2. Therefore, all reported simulation times are effectively increased by a factor of 1.5-2, so that a 4 ps simulation yields a sampling accuracy corresponding to a 6 ps simulation. The "slow-growth" technique as outlined in section 4.5 was utilized to investigate high-lying transition states. The total scan time chosen was about 35000 time steps (≈6 ps real time) for the slow-growth simulations. The reaction coordinates used are described for each individual simulation.



4.9 Studying Fluxionality and Time Scales with AIMD.

With the intent of studying the nature and fluxionality of the resting state we have performed an AIMD simulation where R was modeled by a propyl chain.121 (Note that the resting state in the case of the constrained geometry catalyst is the metal alkyl complex and not the -complex as with the Brookhart catalyst.) A propyl group was used as a model for the growing chain in order to investigate the possible rearrangement of the assumed -agostic kinetic product of the insertion. Initiated from a -agostic Ti-propyl complex, a 4 ps simulation at 300 K was performed. In order to enhance the sampling, the masses were rescaled to 5.0(Ti), 2.0 (Si, N and C), and 1.5 (H) atomic mass units. Therefore, the time scales are fictitious and the 4 ps simulation is approximately equivalent to a 7 ps simulation.



The MD simulation revealed that there was rapid inter conversion between - and -agostic Ti-alkyl complexes. The right hand side of Figure 4.4 shows two snapshot structures from the simulation representative of the -agostic complex and the -agostic complex. The two graphs in Figure 4.4 trace structural quantities during the dynamics important in characterizing the resting state. Graph (a) follows the Ti-H distance while
(b) follows the Ti-H distances, with the shaded regions indicating the formation of - and - agostic bonds, respectively. The trajectory reveals that the propyl chain rapidly inter converts between the - and -agostic alkyl complexes, spending roughly equal time in each of the conformations. Although the time scales in the AIMD simulation are fictitious because of the mass rescaling, the simulation does demonstrated that the fluctuation of the resting state alkyl complex is extremely rapid. The graphs in Figure 4.4 also show that there is always an agostic interaction present. When the-agostic bond is lost, it is immediately replaced by another -agostic bond or a -agostic bond. Thus, the strong preference for the formation of agostic interactions demonstrates the stabilization accrued from these interactions. Another excellent demonstration of the PAW AIMD method to study fluxionality and time scales is that of Margl and coworkers132 who have examined the dynamics of beryllocene.




Figure 4.4. Selected structural quantities as a function of the simulation time for the AIMD simulation of the Ti-propyl model of the resting state. Shaded regions in graphs a and b indicate agostic bonding. Vertical lines separate where the Ti-propyl cation can be characterized as - and -agostic complexes. Shown to the right of the graphs are two snap shot structures from the simulation characteristic of the - and -agostic complexes.

4.10 Using AIMD to Chart Reaction Paths on Flat Potential Surfaces.

We have used AIMD to chart reaction pathways in systems with high configurational variability. Such "flat" potential energy surfaces are often difficult and tedious to explore with conventional static methods. By using the slow growth technique, AIMD can be utilized to initially scan the optimal reaction pathway. As demonstrated by the simulation of the resting state in Figure 4.4, the potential energy surface associated with the constrained geometry system exhibits these problematic traits. In studying the olefin insertion process in the constrained geometry catalyst, initial static calculations revealed that there were at least four -agostic -complexes that were all within a small 2.4 kcal/mol range. Rather than explore the insertion process commencing from each of the four -complexes, the insertion process was mapped out using the slow growth method whereby an ethene molecule was gradually inserted into the Ti-C bond of the Ti-propyl+ resting state. In this simulation the distance between the C and the midpoint of the C-C bond of the ethene was used as the slow growth reaction coordinate. A rapid 20000 time step simulation was performed where the RC was varied from 5.1 Å, a distance in which the incoming olefin is too far to form a strong -bond, to a value of 1.9 Å. Again the simulation was thermostated at 300 K and the masses were rescaled as in the previous resting state simulation.







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