ChemNetworks a complex Network Analysis Tool For Chemical Systems



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6.0 EXAMPLES
In this section, sample input and output files will be discussed for the bulk water, water/Formamide binary mixture, Water/Uranyl mixture, and Water/Methanol/Ethanol ternary mixture.
6.1 BULK WATER

A single snapshot from the molecular dynamics simulation of bulk water at room temperature will be used for the purpose of illustrating the ChemNetworks input file preparation. A detailed explanation of the input and output files will be provided.



Input File (Water.input)

The blue numbers on the left of this sample input file are line numbers for reference in this manual, and are not used in practice.



1 [NUMBER OF SOLVENT TYPES] 1

2 [NUMBER OF SOLUTE TYPES] 0

3 [NUMBER OF ATOMS IN SOLVENT1] 3

4 O 1

5 H 2

6 H 3

7 [PERIODIC BOUNDARY CONDITIONS] 1

8 [BOX XSIDE] 18.643


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