Publication list on hydroshear use (to 11 January 2017) 2017


Comparative genomics of citric-acid-producing Aspergillus niger ATCC 1015 versus enzyme-producing CBS 513.88



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Comparative genomics of citric-acid-producing Aspergillus niger ATCC 1015 versus enzyme-producing CBS 513.88.


Mikael R. Andersen, Margarita P. Salazar, Peter J. Schaap, Peter J.I. van de Vondervoort, David Culley, Jette Thykaer, Jens C. Frisvad, Kristian F. Nielsen, Richard Albang, Kaj Albermann, Randy M. Berka, Gerhard H. Braus, Susanna A. Braus-Stromeyer, Luis M. Corrochano, Ziyu Dai, Piet W.M. van Dijck, Gerald Hofmann, Linda L. Lasure, Jon K. Magnuson, Hildegard Menke, Martin Meijer, Susan L. Meijer, Jakob B. Nielsen, Michael L. Nielsen, Albert J.J. van Ooyen, Herman J. Pel, Lars Poulsen, Rob A. Samson, Hein Stam, Adrian Tsang, Johannes M. van den Brink, Alex Atkins, Andrea Aerts, Harris Shapiro, Jasmyn Pangilinan, Asaf Salamov, Yigong Lou, Erika Lindquist, Susan Lucas, Jane Grimwood, Igor V. Grigoriev, Christian P. Kubicek, Diego Martinez, Noël N.M.E. van Peij, Johannes A. Roubos, Jens Nielsen, and Scott E. Baker

Genome Research, June 2011; 21(6): 885–897

http://www.ncbi.nlm.nih.gov/pmc/articles/PMC3106321/
The art and design of functional metagenomic screens.

Marcus Taupp, Keith Mewis, and Steven J. Hallam.



Current Opinion in Biotechnology, June 2011; 22(3): 465-472.

https://www.researchgate.net/profile/Steven_Hallam/publication/50866906_The_art_and_design_of_functional_metagenomic_screens/links/0c9605383c83a778dc000000.pdf
A comprehensive characterization of the caspase gene family in insects from the order Lepidoptera.

Juliette Courtiade, Yannick Pauchet, Heiko Vogel, and David G. Heckel.



BMC Genomics, 8 July 2011; 12(1): 357, 12 pp.

http://www.biomedcentral.com/1471-2164/12/357/
Switchgrass (Panicum virgatum L.) polyubiquitin gene (PvUbi1 and PvUbi2) promoters for use in plant transformation.

David G.J. Mann, Zachary R. King, Wusheng Liu, Blake L. Joyce, Ryan J. Percifield, Jennifer S. Hawkins, Peter R. LaFayette, Barbara J. Artelt, Jason N. Burris, Mitra Mazarei, Jeffrey L. Bennetzen, Wayne A. Parrott and Charles N. Stewart Jr.



BMC Biotechnology, 11 July 2011; 11(1): 74, 14 pp.

http://www.ncbi.nlm.nih.gov/pmc/articles/PMC3161867/
Methods of identifying stimulants for biogenic methane production from hydrocarbon-bearing formations.

Inventors: Gerardo Vicente Toledo, Toby Howard Richardson, Ulrich Stingl, Eric J. Mathur, J. Craig Venter



United States Patent: US 7977056 B2, Publication Date: 12 July 2011

http://www.freepatentsonline.com/7977056.html
Genes of an otitis media isolate of nontypeable Haemophilus influenzae.

Inventors: Lauren O. Bakaletz, Robert Munson, David Dyer



EU Patent Application: EP 2343312 A1, Publication Date: 13 July 2012

http://www.freepatentsonline.com/EP2343312.html
GREPSEQ: An Almost Inexhaustible, Cost-Effective, High-Throughput Protocol for the Generation of Selector Sequences.

Inventors: Fred H. Gage, Jonathan Scolnick, and Gene Wei Ming Yeo.



U.S. Patent Application: 2011/0172105 A1, Publication Date: 14 July 2011;

https://www.google.com/patents/US20110172105
New genomic resources for switchgrass: a BAC library and comparative analysis of homoeologous genomic regions harboring bioenergy traits.

Christopher A. Saski, Zhigang Li, Frank A. Feltus, and Hong Luo.



BMC Genomics, 18 July 2011; 12(1): 369, 12 pp.

http://www.ncbi.nlm.nih.gov/pmc/articles/PMC3160424/
Structural alterations from multiple displacement amplification of a human genome revealed by mate-pair sequencing.

Xiang Jiao, Magnus Rosenlund, Sean D. Hooper, Christian Tellgren-Roth, Liqun He, Yutao Fu, Jonathan Mangion, and Tobias Sjöblom.



PLoS One, 22 July 2011; 6(7): e22250, 6 pp.

http://www.ncbi.nlm.nih.gov/pmc/articles/PMC3142133/
Chemical Evolution of a Bacterium’s Genome.

Philippe Marlière, Julien Patrouix, Volker Döring, Piet Herdewijn, Sabine Tricot, Stéphane Cruveiller, Madeleine Bouzon and Rupert Mutzel

Angewandte Chemie, 25 July 2011; 50(31): 7109–7114

http://www.tolonenlab.org/Presentations/MSSB/marliere2011_SI.pdf
Genomic library construction.

Inventors: George M. Church, Kun Zhang



United States Patent: US 7985546 B2, Publication Date: 26 July 2011

https://usgene.sequencebase.com/patents/US7985546
Sequencing of a QTL-rich region of the Theobroma cacao genome using pooled BACs and the identification of trait specific candidate genes.

Frank A. Feltus, Christopher A. Saski, Keithanne Mockaitis, Niina Haiminen, Laxmi Parida, Zachary Smith, James Ford, Margaret E Staton, Stephen P Ficklin, Barbara P Blackmon, Chun-Huai Cheng, Raymond J Schnell, David N Kuhn and Juan-Carlos Motamayor



BMC Genomics, 27 July 2011; 12(1): 379, 16 pp.

http://www.ncbi.nlm.nih.gov/pmc/articles/PMC3154204/
Identification of polymorphic sequences in mixtures of genomic DNA by whole genome sequencing.

Inventor: Richard P. Rava



PCT Patent Application: WO 2011091046 A1, Publication Date: 28 July 2011.

Identification, Cloning and Characterization of Dictyoglomus Turgidum CelA, an Endoglucanase with Cellulase and Mannanase Activity.

Phillip J. Brumm, Spencer Hermanson, Joshua Luedtke and David A. Mead



Journal of Life Sciences, 30 July 2011; 5 (7): 488-496 (open access)



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