Publication list on hydroshear use (to 11 January 2017) 2017


Structural and Functional Divergence of a 1-Mb Duplicated Region in the Soybean (Glycine max) Genome and Comparison to an Orthologous Region from Phaseolus vulgaris



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Structural and Functional Divergence of a 1-Mb Duplicated Region in the Soybean (Glycine max) Genome and Comparison to an Orthologous Region from Phaseolus vulgaris.


Jer-Young Lin, Robert M. Stupar, Christian Hans, David L. Hyten and Scott A. Jackson

The Plant Cell, 18 August 2010; 22:2545-2561
Host Imprints on Bacterial Genomes - Rapid, Divergent Evolution in Individual Patients

Jaroslaw Zdziarski, Elzbieta Brzuszkiewicz, Björn Wullt, Heiko Liesegang, Dvora Biran, Birgit Voigt, Jenny Grönberg-Hernandez, Bryndis Ragnarsdottir, Michael Hecker, Eliora Z. Ron, Rolf Daniel, Gerhard Gottschalk, Jörg Hacker, Catharina Svanborg, Ulrich Dobrindt



PLoS Pathogens, 26 August 2010; 6(8): e1001078, 14 pp.

http://journals.plos.org/plospathogens/article?id=10.1371/journal.ppat.1001078
New plasmids and putative virulence factors from the draft genome of an Australian clinical isolate of Photorhabdus asymbiotica

Paul Wilkinson, Konrad Paszkiewicz, Alex Moorhouse, Jan M. Szubert, Scott Beatson, John Gerrard, Nicholas R. Waterfield, Richard H. Ffrench-Constant



FEMS Microbiology Letters, August 2010; 309(2): 136–143
Structural and functional divergence of a 1-Mb duplicated region in the soybean (Glycine max) genome and comparison to an orthologous region from Phaseolus vulgaris.

Jer-Young Lin, Robert M. Stupar, Christian Hans, David L. Hyten, and Scott A. Jackson.

The Plant Cell, August 2010; 22(8): 2545-2561.

http://www.ncbi.nlm.nih.gov/pmc/articles/PMC2947175/
Dynamics of the Mammalian APOBEC3 locus and the relationship between Mammalian APOBEC3 and Lentiviral Vif Proteins.

Rebecca St. Claire LaRue



PhD Theses, August 2010; The University of Minnesota, 136 pp.

http://citeseerx.ist.psu.edu/viewdoc/download?doi=10.1.1.460.9797&rep=rep1&type=pdf
Studies of the evolution of parasitic plants in the genus Striga, using systematic, population genetics, and genomic approaches.

Matthew Charles Estep

PhD Theses, August 2010; University of Georgia, Athens, 131 pp.

https://getd.libs.uga.edu/pdfs/estep_matthew_c_201008_phd.pdf
Comparative genomic analysis of the false killer whale (Pseudorca crassidens) LMBR1 locus.

Dae-Won Kim, Sang-Haeng Choi, Ryong N. Kim, Sun-Hong Kim, Sang-Gi Paik, Seong-Hyeuk Nam, Dong-Wook Kim, Aeri Kim, Aram Kang, Hong-Seog Park



Genome, 1 September 2010; 53(9): 658-666
Multi-Platform Next-Generation Sequencing of the Domestic Turkey (Meleagris gallopavo): Genome Assembly and Analysis.

Rami A. Dalloul, Julie A. Long, Aleksey V. Zimin, Luqman Aslam, Kathryn Beal, Le Ann Blomberg, Pascal Bouffard, David W. Burt, Oswald Crasta, Richard P. M. A. Crooijmans, Kristal Cooper, Roger A. Coulombe, Supriyo De, Mary E. Delany, Jerry B. Dodgson, Jennifer J. Dong, Clive Evans, Karin M. Frederickson, Paul Flicek, Liliana Florea, Otto Folkerts, Martien A. M. Groenen, Tim T. Harkins, Javier Herrero, Steve Hoffmann, Hendrik-Jan Megens, Andrew Jiang, Pieter de Jong, Pete Kaiser, Heebal Kim, Kyu-Won Kim, Sungwon Kim, David Langenberger, Mi-Kyung Lee, Taeheon Lee, Shrinivasrao Mane, Guillaume Marcais, Manja Marz, Audrey P. McElroy, Thero Modise, Mikhail Nefedov, Cédric Notredame, Ian R. Paton, William S. Payne, Geo Pertea, Dennis Prickett, Daniela Puiu, Dan Qioa, Emanuele Raineri, Magali Ruffier, Steven L. Salzberg, Michael C. Schatz, Chantel Scheuring, Carl J. Schmidt, Steven Schroeder, Stephen M. J. Searle, Edward J. Smith, Jacqueline Smith, Tad S. Sonstegard, Peter F. Stadler, Hakim Tafer, Zhijian (Jake) Tu, Curtis P. Van Tassell, Albert J. Vilella, Kelly P. Williams, James A. Yorke, Liqing Zhang, Hong-Bin Zhang, Xiaojun Zhang, Yang Zhang, Kent M. Reed



PLoS Biology, 7 September 2010; 8(9): e1000475, 21 pp.

http://www.ncbi.nlm.nih.gov/pmc/articles/PMC2935454/

Extensive loss of translational genes in the structurally dynamic mitochondrial genome of the angiosperm Silene latifolia.


Daniel B Sloan, Andrew J Alverson, Helena Štorchová, Jeffrey D Palmer, Douglas R Taylor

BMC Evol Biology, 10 September 2010; 10: 274, 15 pp.
Evidence of Transfer by Conjugation of Type IV Secretion System Genes between Bartonella Species and Rhizobium radiobacter in Amoeba.

Watcharee Saisongkorh, Catherine Robert, Bernard La Scola, Didier Raoult, Jean-Marc Rolain



PLoS One, 13 September 2010; 5(9): e12666, 14 pp

http://www.ncbi.nlm.nih.gov/pmc/articles/PMC2938332/



Methods of producing nucleic acid molecules comprising stem loop oligonucleotides 

Inventors: Vladimir L. Makarov, Emmanuel Kamberov, and Brendan J. Tarrier.



United States Patent: US 7803550 B2, Publication Date: 28 September 2010.

https://www.google.com/patents/US7803550
Sex chromosome evolution in amniotes: applications for bacterial artificial chromosome libraries.

Daniel E. Janes, Nicole Valenzuela, Tariq Ezaz, Chris Amemiya, and Scott V. Edwards.

BioMed Research International, 12 October 2010; 2011: 132975, 6 pp.

http://www.ncbi.nlm.nih.gov/pmc/articles/PMC2957134/
Abiotic stress responsive polynucleotides and polypeptides.

Inventors: Joel Kreps, Steven P. Briggs, Stephen A. Goff, Fumiaki Katagiri, Todd Moughamer, Nicholas Provart, Darrell Ricke, Tong Zhu, Robert Dietrich, and Bret Cooper.



U.S. Patent Application: 2010/0275333 A1, Publication Date: 28 October 2010;

https://www.google.com/patents/US20100275333



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