Publication list on hydroshear use (to 11 January 2017) 2017
Transcriptome and methylome profiling reveals relics of genome dominance in the mesopolyploid Brassica oleracea
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Transcriptome and methylome profiling reveals relics of genome dominance in the mesopolyploid Brassica oleraceaIsobel AP Parkin, Chushin Koh, Haibao Tang, Stephen J Robinson, Sateesh Kagale, Wayne E Clarke, Chris D Town, John Nixon, Vivek Krishnakumar, Shelby L Bidwell, France Denoeud, Harry Belcram, Matthew G Links, Jérémy Just, Carling Clarke, Tricia Bender, Terry Huebert, Annaliese S Mason, J Chris Pires, Guy Barker, Jonathan Moore, Peter G Walley, Sahana Manoli, Jacqueline Batley, David Edwards, Matthew N Nelson, Xiyin Wang, Andrew H Paterson, Graham King, Ian Bancroft, Boulos Chalhoub and Andrew G Sharpe Genome Biology, 10 June 2014; 15: R77, 18 pp. http://genomebiology.com/content/pdf/gb-2014-15-6-r77.pdf Genome sequence of Ensifer arboris strain LMG 14919T; a microsymbiont of the legume Prosopis chilensis growing in Kosti, Sudan Wayne Reeve, Rui Tian, Lambert Bräu, Lynne Goodwin, Christine Munk, Chris Detter, Roxanne Tapia, Cliff Han, Konstantinos Liolios, Marcel Huntemann, Amrita Pati, Tanja Woyke, Konstantinos Mavrommatis, Victor Markowitz, Natalia Ivanova, Nikos Kyrpides, Anne Willems Standards in Genomic Sciences, 15 June 2014; 9(3): 473–483. (JGI) http://www.ncbi.nlm.nih.gov/pmc/articles/PMC4148966/pdf/sigs.4828625.pdf Genome sequence of the chromate-resistant bacterium Leucobacter salsicius type strain M1-8T Ji-Hyun Yun, Yong-Joon Cho, Jongsik Chun, Dong-Wook Hyun, Jin-Woo Bae Standards in Genomic Sciences, 15 June 2014; 9(3): 495–504. (PacBio/JGI, 8kb) http://www.ncbi.nlm.nih.gov/pmc/articles/PMC4148977/pdf/sigs.4708537.pdf Genome sequence of the squalene-degrading bacterium Corynebacterium terpenotabidum type strain Y-11T (= DSM 44721T) Christian Rückert, Andreas Albersmeier, Arwa Al-Dilaimi, Hanna Bednarz, Karsten Niehaus, Rafael Szczepanowski, Jörn Kalinowski Standards in Genomic Sciences, 15 June 2014; 9(3): 505–513. (Roche 3kB library) http://www.ncbi.nlm.nih.gov/pmc/articles/PMC4149027/pdf/sigs.4588337.pdf Genome sequence of Ensifer medicae strain WSM1115; an acid-tolerant Medicago-nodulating microsymbiont from Samothraki, Greece Wayne Reeve, Ross Ballard, John Howieson, Elizabeth Drew, Rui Tian, Lambert Bräu, Christine Munk, Karen Davenport, Patrick Chain, Lynne Goodwin, Ioanna Pagani, Marcel Huntemann, Konstantinos Mavrommatis, Amrita Pati, Victor Markowitz, Natalia Ivanova, Tanja Woyke, Nikos Kyrpides Standards in Genomic Sciences, 15 June 2014; 9(3): 514–526. (JGI 9kb library) http://www.ncbi.nlm.nih.gov/pmc/articles/PMC4148968/pdf/sigs.4938652.pdf Genome sequence of Rhizobium leguminosarum bv trifolii strain WSM1689, the microsymbiont of the one flowered clover Trifolium uniflorum Jason Terpolilli, Tian Rui, Ron Yates, John Howieson, Philip Poole, Christine Munk, Roxanne Tapia, Cliff Han, Victor Markowitz, Reddy Tatiparthi, Konstantinos Mavrommatis, Natalia Ivanova, Amrita Pati, Lynne Goodwin, Tanja Woyke, Nikos Kyrpides, Wayne Reeve Standards in Genomic Sciences, 15 June 2014; 9(3): 527–539. (JGI 12 kb library) http://www.ncbi.nlm.nih.gov/pmc/articles/PMC4149022/pdf/sigs.4988693.pdf Genome sequence of the Listia angolensis microsymbiont Microvirga lotononidis strain WSM3557T Wayne Reeve, Julie Ardley, Rui Tian, Sofie De Meyer, Jason Terpolilli, Vanessa Melino, Ravi Tiwari, Ronald Yates, Graham O’Hara, John Howieson, Mohamed Ninawi, Xiaojing Zhang, David Bruce, Chris Detter, Roxanne Tapia, Cliff Han, Chia-Lin Wei, Marcel Huntemann, James Han, I-Min Chen, Konstantinos Mavromatis, Victor Markowitz, Ernest Szeto, Natalia Ivanova, Ioanna Pagani, Amrita Pati, Lynne Goodwin, Tanja Woyke, Nikos Kyrpides Standards in Genomic Sciences, 15 June 2014; 9(3): 540–550. (JGI 10 kb library) http://www.ncbi.nlm.nih.gov/pmc/articles/PMC4149032/pdf/sigs.4548266.pdf Complete genome sequence of Anabaena variabilis ATCC 29413 Teresa Thiel, Brenda S. Pratte, Jinshun Zhong, Lynne Goodwin, Alex Copeland, Susan Lucas, Cliff Han, Sam Pitluck, Miriam L. Land, Nikos C Kyrpides, Tanja Woyke Standards in Genomic Sciences, 15 June 2014; 9(3): 562–573. (3, 9 and 40 kb libraries) http://www.ncbi.nlm.nih.gov/pmc/articles/PMC4148955/pdf/sigs.3899418.pdf Genome sequence and emended description of Leisingera nanhaiensis strain DSM 24252T isolated from marine sediment Sven Breider, Hazuki Teshima, Jörn Petersen, Olga Chertkov, Hajnalka Dalingault, Amy Chen, Amrita Pati, Natalia Ivanova, Alla Lapidus, Lynne A. Goodwin, Patrick Chain, John C. Detter, Manfred Rohde, Brian J. Tindall, Nikos C. Kyrpides, Tanja Woyke, Meinhard Simon, Markus Göker, Hans-Peter Klenk, Thorsten Brinkhoff Standards in Genomic Sciences, 15 June 2014; 9(3): 687–703. (JGI 7 kb library) http://www.ncbi.nlm.nih.gov/pmc/articles/PMC4148953/pdf/sigs.3828824.pdf Non-contiguous finished genome sequence and description of Fenollaria massiliensis gen. nov., sp. nov., a new genus of anaerobic bacterium. Isabelle Pagnier, Olivier Croce, Catherine Robert, Didier Raoult, and Bernard La Scola. Standards in Genomic Sciences, 15 June 2014; 9(3): 704–717 (3-4 kb library) http://www.ncbi.nlm.nih.gov/pmc/articles/PMC4148993/pdf/sigs.3957647.pdf Complete genome of the switchgrass endophyte Enterobacter clocace P101. Jodi L. Humann, Mark Wildung, Derek Pouchnik, Austin A. Bates, Jennifer C. Drew, Ursula N. Zipperer, Eric W. Triplett, Dorrie Main, Brenda K. Schroeder Standards in Genomic Sciences, 15 June 2014; 9(3): 726–734. (HS+) http://www.ncbi.nlm.nih.gov/pmc/articles/PMC4149030/pdf/sigs.4808608.pdf Draft genome sequences and description of Lactobacillus rhamnosus strains L31, L34, and L35 Prapaporn Boonma, Jennifer K. Spinler, Xiang Qin, Chutima Jittaprasatsin, Donna M. Muzny, Harsha Doddapaneni, Richard Gibbs, Joe Petrosino, Somying Tumwasorn, James Versalovic Standards in Genomic Sciences, 15 June 2014; 9(3): 744–754. (8 kb library) http://www.ncbi.nlm.nih.gov/pmc/articles/PMC4148986/pdf/sigs.5048907.pdf Complete Genome sequence of Burkholderia phymatum STM815T, a broad host range and efficient nitrogen-fixing symbiont of Mimosa species Lionel Moulin, Agnieszka Klonowska, Bournaud Caroline, Kristina Booth, Jan A.C. Vriezen, Rémy Melkonian, Euan K. James, J. Peter W. Young, Gilles Bena, Loren Hauser, Miriam Land, Nikos Kyrpides, David Bruce, Patrick Chain, Alex Copeland, Sam Pitluck, Tanja Woyke, Michelle Lizotte-Waniewski, Jim Bristow, Margaret Riley Standards in Genomic Sciences, 15 June 2014; 9(3): 763–774. (3, 8 and 40 kb libraries) http://www.ncbi.nlm.nih.gov/pmc/articles/PMC4148976/pdf/sigs.4861021.pdf Non-contiguous finished genome sequence and description of Bacteroides neonati sp. nov., a new species of anaerobic bacterium. Nadim Cassir, Olivier Croce, Isabelle Pagnier, Samia Benamar, Carine Couderc, Catherine Robert, Didier Raoult, Bernard La Scola Standards in Genomic Sciences, 15 June 2014; 9(3): 794–806 http://www.ncbi.nlm.nih.gov/pmc/articles/PMC4149005/ Genome sequence and description of Neterenkonia massiliensis sp. nov. Sophie Edouard, Senthil Sankar, Nicole Prisca Makaya Dangui, Jean-Christophe Lagier, Caroline Michelle, Didier Raoult, Pierre-Edouard Fournier Standards in Genomic Sciences, 15 June 2014; 9(3): 866–882 http://link.springer.com/article/10.4056/sigs.5631022/fulltext.html Complete genome sequence of the Phaeobacter gallaeciensis type strain CIP 105210T (= DSM 26640T = BS107T) Oliver Frank, Silke Pradella, Manfred Rohde, Carmen Scheuner, Hans-Peter Klenk, Markus Göker, Jörn Petersen Standards in Genomic Sciences, 15 June 2014; 9(3): 914–932 (3 kb library) http://link.springer.com/article/10.4056/sigs.5179110/fulltext.html Non-contiguous finished genome sequence of Corynebacterium timonense type strain 5401744T. Veronique Roux, Catherine Robert, and Didier Raoult. Standards in Genomic Sciences, 15 June 2014; 9(3): 948–955 http://link.springer.com/article/10.4056/sigs.4277954/fulltext.html Non contiguous-finished genome sequence and description of Enorma timonensis sp. nov. Dhamodharan Ramasamy, Gregory Dubourg, Catherine Robert, Aurelia Caputo, Laurent Papazian, Didier Raoult, and Pierre-Edouard Fournier. Standards in Genomic Sciences, 15 June 2014; 9(3): 970–986. http://link.springer.com/article/10.4056/sigs.4878632/fulltext.html Non-contiguous finished genome sequence and description of Anaerococcus provencensis sp. nov. Isabelle Pagnier, Olivier Croce, Catherine Robert, Didier Raoult, and Bernard La Scola. Standards in Genomic Sciences, 15 June 2014; 9(3): 1198–1210. http://link.springer.com/article/10.4056/sigs.5501035/fulltext.html Non-contiguous finished genome sequence and description of Kurthia senegalensis sp. nov. Veronique Roux, Jean-Christophe Lagier, Aurore Gorlas, Catherine Robert, and Didier Raoult. Standards in Genomic Sciences, 15 June 2014; 9(3): 1319-1330. http://www.ncbi.nlm.nih.gov/pmc/articles/PMC4148981/ Non-contiguous finished genome sequence of Prevotella timonensis type strain 4401737T. Veronique Roux, Catherine Robert, and Didier Raoult. Standards in Genomic Sciences, 15 June 2014; 9(3): 1346-1353. http://www.ncbi.nlm.nih.gov/pmc/articles/PMC4148998/ Methods for raising antibodies. Inventors: Colin W. Dykes, Sergey A. Dryga, Lisa-Jo Ann Clarizia, Eddie W. Adams, Meghan Norvell US Patent Application: 2014/0171340 A1, Publication Date: 19 June 2014; http://www.google.com/patents/US20140171340 Development and Evaluation of Quality Metrics for Bioinformatics Analysis of Viral Insertion Site Data Generated Using High Throughput Sequencing. Hongyu Gao, Troy Hawkins, Aparna Jasti, Yu-Hsiang Chen, Keithanne Mockaitis, Mary Dinauer, and Kenneth Cornetta. Biomedicines, June 2014; 2(2): 195-210. http://www.mdpi.com/2227-9059/2/2/195/htm Exploring functional elements and genomic variation in the noncoding genome Sebastiaan August Albert Cornelis van Heesch PhD Theses, 2 July 2014; Universiteit Utrecht, The Nederlands, 196 pp. http://dspace.library.uu.nl/handle/1874/294661 NF-κB signaling and vesicle transport are correlated with the reactivation of the memory trace of morphine dependence Junyi Ye, Zhaoyang Yang, Candong Li, Meimei Cai, Daizhan Zhou, Qin Zhang, Yiming Wei, TingWang and Yun Liu Diagnostic Pathology, 10 July 2014; 9:142, 13 pp http://www.biomedcentral.com/content/pdf/1746-1596-9-142.pdf Methods for analyzing nucleic acids. Inventor: Mark Umbarger United States Patent: 8778609 B1, Publication Date: 15 July 2014; https://www.google.com/patents/US8778609 Requirements for Pseudomonas aeruginosa acute burn and chronic surgical wound infection. Keith H. Turner, Jake Everett, Urvish Trivedi, Kendra P. Rumbaugh, and Marvin Whiteley. PLoS Genetics, 24 July 2014; 10(7): e1004518, 12 pp. http://journals.plos.org/plosgenetics/article?id=10.1371/journal.pgen.1004518 Malignant catarrhal fever in American bison (Bison bison) experimentally infected with alcelaphine herpesvirus 2. Naomi S. Taus, Donal O’Toole, David R. Herndon, Cristina W. Cunha, Janet V. Warg, Bruce S. Seal, Angela Brooking, and Hong Li. Veterinary Microbiology, 6 August 2014; 172(1): 318-322. Xylanase hyper-producer: the genome of the thermophilic fungus Thermomyces lanuginosus. Nokuthula Peace Mchunu PhD Theses, 8 August 2014; Durban University of Technology, Durban, South Africa, 247 pp. http://ir.dut.ac.za/handle/10321/1116 High throughput paired-end sequencing of large-insert clone libraries Inventors: Andreas Gnirke, Robert Nicol, Louise Williams, Maura T. Costello, and Scott Steelman. U.S. Patent Application: 2014/0228223 A1, Publication Date: 14 August 2014; https://www.google.com/patents/US20140228223 Variant database. Inventors: Marcia M. Nizzari, Benjamin H. Breton, David L. Tefft, and Xavier S. Haurie. United States Patent: 8812422 B2, Publication Date: 19 August 2014; https://www.google.com/patents/US8812422 A novel whole genome amplification method using type IIS restriction enzymes to create overhangs with random sequences Xiaoming Pan, Baihui Wan, Chunchuan Li, Yu Liu, Jing Wang, Haijin Mou, Xingguo Liang Journal of Biotechnology, 20 August 2014; 184(1): 1–6 Directory: media media -> Applications to Drill media -> Unicef voices of Youth Chat Theme: Children and aids nigeria and Zimbabwe 13 October 2006 Background media -> Tsunami Terror Alert: Voices of Youth media -> Biblical Eschatology Presentation by: D. Paul Beck May 4, 2016 Ground Rules media -> Guide to completing the collection using the Omnibus system media -> The milk carton kids media -> Events Date and Location media -> The Gilded Age: The First Generation of Historians by H. Wayne Morgan University of Oklahoma, April 18, 1997 media -> Analysis of Law in the United Kingdom pertaining to Cross-Border Disaster Relief Prepared by: For the 30 June 2010 Foreword media -> Cuba fieldcourse 2010 Download 1.4 Mb. Share with your friends:
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