Publication list on hydroshear use (to 11 January 2017) 2017


Performance comparison of second- and third-generation sequencers using a bacterial genome with two chromosomes



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Performance comparison of second- and third-generation sequencers using a bacterial genome with two chromosomes


Mari Miyamoto, Daisuke Motooka, Kazuyoshi Gotoh, Takamasa Imai, Kazutoshi Yoshitake, Naohisa Goto, Tetsuya Iida, Teruo Yasunaga, Toshihiro Horii, Kazuharu Arakawa, Masahiro Kasahara and Shota Nakamura

BMC Genomics, 21 August 2014; 15: 699, 9 pp. (HS+)

http://www.biomedcentral.com/content/pdf/1471-2164-15-699.pdf

Population split time estimation and X to autosome effective population size differences inferred using physically phased genomes


Shiya Song, Elzbieta Sliwerska, Jeffrey M Kidd

bioRxiv, 22 August 2014; 25 pp

http://www.biorxiv.org/content/biorxiv/early/2014/08/22/008367.full.pdf
Functional Consequences of Chromosomal Rearrangements in Neurodevelopmental Disorder.

Kagistia Hana Utami

PhD Theses, 23 August 2014; National University of Singapore, 214 pp.

http://scholarbank.nus.edu.sg/handle/10635/107404
DNA amplification and sequencing using DNA molecules generated by random fragmentation.

Inventors: Vladimir L. Makarov, Irina Sleptsova, Emmanuel Kamberov, Eric Bruening



United States Patent: US 8815504 B2, Publication Date: 26 August 2014;

http://www.google.com/patents/US8815504
Methods for separating nucleic acids by size.

Inventors: Roland Fabis, Nadine Krüger, and Jan Petzel.



U.S. Patent Application: 20140243216 A1, Publication Date: 28 August 2014;

https://www.google.com/patents/US20140243216
Variation in allelic expression associated with a recombination hotspot in Zea mays.

Jennifer S. Hawkins, Vivian Delgado, Liang Feng, Michael Carlise, Hugo K. Dooner, and Jeffrey L. Bennetzen.



The Plant Journal, August 2014; 79(3): 375–384

http://onlinelibrary.wiley.com/doi/10.1111/tpj.12537/full
Sequencing and annotated analysis of full genome of Holstein breed bull

Sulev Kõks, Ene Reimann, Rutt Lilleoja, Freddy Lättekivi, Andres Salumets, Paula Reemann, and Ülle Jaakma.

Mammalian Genome, August 2014; 25(7-8): 363-373.
Patterns of simple sequence repeats in cultivated blueberries (Vaccinium section Cyanococcus spp.) and their use in revealing genetic diversity and population structure.

Yang Bian, James Ballington, Archana Raja, Cory Brouwer, Robert Reid, Mark Burke, Xinguo Wang, Lisa J. Rowland, Nahla Bassil, and Allan Brown.



Molecular Breeding, August 2014; 34(2): 675-689.

http://www.researchgate.net/profile/Yang_Bian/publication/261171379_Patterns_of_simple_sequence_repeats_in_cultivated_blueberries_(Vaccinium_sectionCyanococcus_spp.)_and_their_use_in_revealing_genetic_diversity_and_population_structure._Mol._Breeding/links/5422c1af0cf238c6ea6bf7bd.pdf
Amplification Biases and Consistent Recovery of Loci in a Double-Digest RAD-seq Protocol.

Jeffrey M. DaCosta, Michael D. Sorenson



PLoS ONE, 4 September 2014; 9(9): e106713, 14 pp.

http://www.plosone.org/article/fetchObject.action?uri=info:doi/10.1371/journal.pone.0106713&representation=PDF
Sequence assembly.

Inventors: Gregory Porreca, and Caleb Kennedy.



US Patent Application: 2014/0255931 A1, Publication Date: 11 September 2014;

https://www.google.com/patents/US20140255931
Hierarchical assembly of optical maps

Inventor: Deacon John Sweeney



US Patent Application: 2014/0272948 A1, Publication Date: 18 September 2014;

http://www.google.com/patents/US20140272948
Generating cell-free DNA libraries directly from blood.

Inventors: Anupama Srinivasan, and Richard P. Rava.



U.S. Patent Application: 2014/0274740 A1, Publication Date: 18 September 2014;

https://www.google.com/patents/US20140274740
Method for detecting micro-deletion and micro-repetition of chromosome

Inventors: Fang Chen, Xiaoyu Pan, Shengpei Chen, Xuchao Li, Hui Jiang, and Xiuqing Zhang.



US Patent Application: 2014/0274745 A1, Publication Date: 18 September 2014;

https://www.google.com/patents/US20140274745
Sequence assembly using optical maps.

Inventor: Deacon John Sweeney



US Patent Application: 2014/0274750 A1, Publication Date: 18 September 2014;
http://www.google.com/patents/US20140274750
Methods and systems for storing sequence read data

Inventors: Caleb J. Kennedy, Niru Chennagiri



United States Patent: 8847799 B1, Publication Date: 30 September 2014.

http://www.google.com/patents/US8847799
Screening and Characterization of a Novel Cellulase Gene from the Gut Microflora of Hermetia illucens Using Metagenomic Library.

Chang-Muk Lee, Young-Seok Lee, So-Hyeon Seo, Sang-Hong Yoon, Soo-Jin Kim, Bum-Soo Hahn, Joon-Soo Sim, Bon-Sung Koo

Journal of Microbiology and Biotechnology, September 2014; 24(9): 1196-1206.

http://www.jmb.or.kr/journal/viewJournal.html?doi=10.4014/jmb.1405.05001



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