Publication list on hydroshear use (to 11 January 2017) 2017


Hydrodynamic shearing of DNA in a polymeric microfluidic device



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Hydrodynamic shearing of DNA in a polymeric microfluidic device.


Irina V. NesterovaMateusz L. HupertMalgorzata A. Witek and Steven A. Soper

Lab on a Chip, 21 March 2012; 12(6): 1044-1047.
Identification of genes expressed in cultures of E. coli lysogens carrying the Shiga toxin-encoding prophage Φ24B.

Laura M. Riley, Marta Veses-Garcia, Jeffrey D. Hillman, Martin Handfield, Alan J. McCarthy, and Heather E. Allison.



BMC Microbiology, 22 March 2012; 12(1): 42, 14 pp.

http://www.ncbi.nlm.nih.gov/pmc/articles/PMC3342100/
Genetic analysis of the Cronobacter sakazakii O4 to O7 O-antigen gene clusters and Development of a PCR assay for identification of all C. sakazakii O serotypes.

Yamin Sun, Min Wang, Quan Wang, Boyang Cao, Xin He, Kun Li, Lu Feng, and Lei Wang.



Applied and Environmental Microbiology, 23 March 2012; 78(11): 3966-3974.
Pirossequenciamento e análise comparativa de genomas do fitopatógeno Xylella fastidiosa.

Paulo Marques Pierry

MS Therses, 23 March 2012; Universidade de São Paulo.

http://www.teses.usp.br/teses/disponiveis/46/46131/tde-15052012-104940/en.php
Multiple long mate pair approaches to facilitate short read based de novo genome assembly.

Julianna Chow, Jaya Rajamani, James Han, Alicia Clum, Alex Copeland, Shweta Deshpande and Chia-Lin Wei



LBNL Poster LBNL-6064, 30 March 2012; LLNL-ABS-546451

https://escholarship.org/uc/item/34f6p03s#page-1
Development of polymorphic anonymous nuclear DNA markers for the endangered Mitchell’s satyr butterfly, Neonympha mitchellii mitchellii (Lepidoptera: Nymphalidae).

Christopher A. Hamm



Conservation Genetics Resources, March 2012; 4(1): 127-128.

https://www.researchgate.net/profile/Christopher_Hamm/publication/236213556_Development_of_polymorphic_anonymous_nuclear_DNA_markers_for_the_endangered_Mitchells_satyr_butterfly_Neonympha_mitchellii_mitchellii_%28Lepidoptera_Nymphalidae%29/links/0deec5170481626248000000.pdf
Genomic Characterization for Parasitic Weeds of the Genus Striga by Sample Sequence Analysis

Matt C. Estep, Bhavani S. Gowda, Kan Huang, Michael P. Timko, and Jeffrey L. Bennetzen.



The Plant Genome, March 2012, 5(1): 30-41

https://dl.sciencesocieties.org/publications/tpg/articles/5/1/30
Thermostable DNA polymerases and methods of use.

Inventors: Thomas W. Schoenfeld, and David A. Mead.



US Patent Application: 2012/0083018 A1, Publication Date: 5 April 2012.

https://www.google.com/patents/US20120083018
Nucleic acid adaptors and uses thereof.

Inventors: Tanya Biorac, Zhoutao Chen, Bin Li, Melvin Shiwade Wei



PCT Patent Application: WO 2012/044847 A1, Publication Date: 5 April 2012

http://www.google.com/patents/WO2012044847A1
Compositions and methods for nucleic acid sequencing.

Inventors: Cheryl Heiner, Congcong Ma, Geoff Otto, Kevin Travers, Stephen Turner



United States Patent: US 8153375 B2, Publication Date: 10 April 2012

https://www.google.com/patents/US8153375
Genome-wide DNA Methylation scan in major depressive disorder.

Sarven Sabunciyan, Martin J. Aryee, Rafael A. Irizarry, Michael Rongione, Maree J. Webster, Walter E. Kaufman, Peter Murakami, Andree Lessard, Robert H. Yolken,  Andrew P. Feinberg, James B. Potash, and GenRED Consortium

PLoS One, 12 April 2012; 7(4): e34451, 9 pp.

http://www.ncbi.nlm.nih.gov/pmc/articles/PMC3325245/
Genetic basis of transcriptome differences between the founder strains of the rat HXB/BXH recombinant inbred panel.

Marieke Simonis, Santosh S. Atanur, Sam Linsen, Victor Guryev, Frans-Paul Ruzius, Laurence Game, Nico Lansu Ewart de Bruijn, Sebastiaan van Heesch, Steven JM Jones, Michal Pravenec, Tim J Aitman, and Edwin Cuppen.



Genome Biology, 27 April 2012; 13(4): r31, 17 pp.

http://genomebiology.com/content/13/4/r31
Evolution and expression of the highly variable cell adhesion molecule Dscam in the crustacean Daphnia and other arthropods.

Daniela Brites

PhD Theses, 27 April 2012; University of Basel, 154 pp.

http://edoc.unibas.ch/18995/1/Thesis_Brites.pdf
Sequencing chromosomal abnormalities reveals neurodevelopmental loci that confer risk across diagnostic boundaries.

Michael E. Talkowski, Jill A. Rosenfeld, Ian Blumenthal, Vamsee Pillalamarri, Colby Chiang, Adrian Heilbut, Carl Ernst, Carrie Hanscom, Elizabeth Rossin, Amelia M. Lindgren, Shahrin Pereira, Douglas Ruderfer, Andrew Kirby, Stephan Ripke, David J. Harris, Ji-Hyun Lee, Kyungsoo Ha, Hyung-Goo Kim, Benjamin D. Solomon, Andrea L. Gropman, Diane Lucente, Katherine Sims, Toshiro K. Ohsumi, Mark L. Borowsky, Stephanie Loranger, Bradley Quade, Kasper Lage, Judith Miles, Bai-Lin Wu, Yiping Shen, Benjamin Neale, Lisa G. Shaffer, Mark J. Daly, Cynthia C. Morton, and James F. Gusella



Cell, 149, 27 April 2012; 149(3): 525-537.

http://www.ncbi.nlm.nih.gov/pmc/articles/PMC3340505/
The plastid redox insensitive 2 mutant of Arabidopsis is impaired in PEP activity and high light-dependent plastid redox signalling to the nucleus.

Peter Kindgren, Dmitry Kremnev, Nicolás E. Blanco, Juan de Dios Barajas López, Aurora Piñas Fernández, Christian Tellgren-Roth, Ian Small, and Åsa Strand.



The Plant Journal, April 2012; 70(2): 279-291.

http://onlinelibrary.wiley.com/doi/10.1111/j.1365-313X.2011.04865.x/full



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