Methods for deep examination of DNA.
Mårten Neiman
PhD Theses, 30 May 2013; Karolinska Institutet, Stockholm, Sweeden, 111 pp.
http://publications.ki.se/xmlui/handle/10616/41538
The plasmidome of a Salmonella entericaserovar Derby isolated from pork meat.
Anne Bleicher, Gerhard Schöfl, Maria del Rosario Rodicio, and Hans Peter Saluz.
Plasmid, May 2013; 69(3): 202-210
The genome of the mustard leaf beetle encodes two active xylanases originally acquired from bacteria through horizontal gene transfer.
Yannick Pauchet, and David G. Heckel.
Proceedings of the Royal Society, ser. B, May 2013; 280: 20131021, 8 pp.
Compositions and methods for nucleic acid sequencing.
Inventors: Kevin Travers, Geoff Otto, Stephen Turner, Cheryl Heiner, Congcong Ma
United States Patent: US 8455193 B2, Publication Date: 4 June 2013
http://www.google.com/patents/US8455193
Tagged-fragment map assembly.
Inventors: Peter Goldstein, Franco Preparata, Eli Upfal
United States Patent: US 8455260 B2, Publication Date: 4 June 2013
http://www.google.fr/patents/US8455260
Methods and compositions for generating polynucleic acid fragments.
Inventors: Paolo Actis, Muhammad Akram Tariq, Hyunsung John Kim, Nader Pourmand
US Patent Application: US 2013/0143774 A1; Publication Date: 6 June 2013
http://patents.com/us-20130143774.html
Sequences of Brachyspira, immunogenic compounds, methods for preparation and use thereof.
Inventors: David J. Hampson, Tom La, Matthew I. Bellgard, Nyree D. Phillips
United States Patent: US 8460681 B2, Publication date: 11 June 2013
http://www.google.com/patents/US8460681
Non-contiguous finished genome sequence and description of Bacillus massiliosenegalensis sp. nov.
Dhamodharan Ramasamy, Jean-Christophe Lagier, Aurore Gorlas, Didier Raoult, Pierre-Edouard Fournier
Standards in Genomic Sciences, 15 June 2013; 8(2): 264-278
http://www.ncbi.nlm.nih.gov/pmc/articles/PMC3746431/
Non-contiguous finished genome sequence and description of Bartonella senegalensis sp. nov.
Oleg Mediannikov, Khalid El Karkouri, Georges Diatta, Catherine Robert, Pierre-Edouard Fournier, and Didier Raoult.
Standards in Genomic Sciences, 15 June 2013; 8(2): 279-289.
http://www.ncbi.nlm.nih.gov/pmc/articles/PMC3746424/
Non-contiguous finished genome sequence and description of Enorma massiliensis gen. nov., sp. nov., a new member of the Family Coriobacteriaceae
Ajay Kumar Mishra, Perrine Hugon, Jean-Christophe Lagier, Thi-Tien Nguyen, Carine Couderc, Didier Raoult, Pierre-Edouard Fournier
Standards in Genomic Sciences, 15 June 2013; 8(2): 290-305
http://www.ncbi.nlm.nih.gov/pmc/articles/PMC3746427/
Genome sequence and description of Timonella senegalensis gen. nov., sp. nov., a new member of the suborder Micrococcinae.
Ajay Kumar Mishra, Jean-Christophe Lagier, Catherine Robert, Didier Raoult, and Pierre-Edouard Fournier.
Standards in Genomic Sciences, 15 June 2013; 8(2): 318-335.
http://www.ncbi.nlm.nih.gov/pmc/articles/PMC3746429/
Non contiguous-finished genome sequence and description of Dielma fastidiosa gen. nov., sp. nov., a new member of the Family Erysipelotrichaceae.
Dhamodharan Ramasamy, Jean-Christophe Lagier, Thi Tien Nguyen, Didier Raoult, and Pierre-Edouard Fournier.
Standards in Genomic Sciences, 15 June 2013; 8(2): 336-351.
http://www.ncbi.nlm.nih.gov/pmc/articles/PMC3746426/
Assembling the 20 Gb white spruce (Picea glauca) genome from whole-genome shotgun sequencing data.
Inanc Birol, Anthony Raymond, Shaun D. Jackman, Stephen Pleasance, Robin Coope, Greg A. Taylor, Macaire Man Saint Yuen, Christopher I. Keeling, Dana Brand, Benjamin P. Vandervalk, Heather Kirk, Pawan Pandoh, Richard A. Moore, Yongjun Zhao, Andrew J. Mungall, Barry Jaquish, Alvin Yanchuk, Carol Ritland, Brian Boyle, Jean Bousquet, Kermit Ritland, John MacKay, Jörg Bohlmann and Steven J.M. Jones
Bioinformatics, 15 June 2013; 29(12): 1492-1497.
http://bioinformatics.oxfordjournals.org/content/early/2013/05/03/bioinformatics.btt178.long
Methods for obtaining a sequence.
Inventors: Dmitry Pushkarev, Stephen R. Quake, Ayelet Voskoboynik, Michael Kertesz
US Patent Application: 2013/0157870 A1, Publication Date: 20 June 2013
http://www.lens.org/images/patent/US/20130157870/A1/US_2013_0157870_A1.pdf
Method for Sequencing a Polynucelotide Template.
Inventors: Eric Hans Vermaas, Graham John Worsley, Jonathan Mark Boutell, Colin Lloyd Barnes, Roberto Rigatti, Niall Anthony Gormley, Geoffrey Paul Smith, Vincent Peter Smith, Tobias William Barr Ost, David Bentley
US Patent Application: 2013/0165327 A1, Publication Date: 27 June 2013
http://www.google.com/patents/US20130165327
Chromosome painting in silico in a bacterial species reveals fine population structure.
Koji Yahara, Yoshikazu Furuta, Kenshiro Oshima, Masaru Yoshida, Takeshi Azuma, Masahira Hattori, Ikuo Uchiyama, and Ichizo Kobayashi.
Molecular Biology and Evolution, June 2013; 30(6): 1454-1464.
http://www.ncbi.nlm.nih.gov/pmc/articles/PMC3649679/
The genome sequence of the hydrocarbon degrading Acinetobacter venetianus VE-C3.
Marco Fondi, Ermanno Rizzi, Giovanni Emiliani, Valerio Orlandini, Luisa Berna, Maria Cristiana Papaleo, Elena Perrin, Isabel Maida, Giorgio Corti, Gianluca De Bellis, Franco Baldi, Lenie Dijkshoorn, Mario Vaneechoutte, Renato Fani
Research in Microbiology, June 2013; 164(5): 439-449.
https://arca.unive.it/retrieve/handle/10278/37773/28283/FondietlaRESME.pdf
The genome sequence of the colonial chordate, Botryllus schlosseri.
Ayelet Voskoboynik, Norma F. Neff, Debashis Sahoo, Aaron M. Newman, Dmitry Pushkarev, Winston Koh, Benedetto Passarelli H Christina Fan, Gary L Mantalas, Karla J Palmeri, Katherine J Ishizuka, Carmela Gissi, Francesca Griggio, Rachel Ben-Shlomo, Daniel M Corey, Lolita Penland, Richard A White, Irving L Weissman, Stephen R Quake
eLife, 2 July 2013; 2: e00569, 24 pp.
http://www.ncbi.nlm.nih.gov/pmc/articles/PMC3699833/
The genome of the mustard leaf beetle encodes two active xylanases originally acquired from bacteria through horizontal gene transfer.
Yannick Pauchet and David G. Heckel.
Proceedings of the Royal Society B: Biological Sciences, 22 July 2013; 280(1763): 20131021, 7 pp.
http://rspb.royalsocietypublishing.org/content/280/1763/20131021.long
Non-contiguous finished genome sequence and description of Kallipyga massiliae gen. nov., sp. nov., a new member of the family Clostridiales Incertae Sedis XI.
Perrine Hugon, Dhamodharan Ramasamy, Catherine Robert, Carine Couderc, Didier Raoult, Pierre-Edouard Fournier
Standards in Genomic Sciences, 30 July 2013; 8(3): 500-515
http://www.ncbi.nlm.nih.gov/pmc/articles/PMC3910704/
Non-contiguous finished genome sequence and description of Anaerococcus pacaensis sp. nov., a new species of anaerobic bacterium.
Isabelle Pagnier, Olivier Croce, Catherine Robert, Didier Raoult, Bernard La Scola
Standards in Genomic Sciences, 30 July 2013; 8(3): 548-560
Whole-genome resequencing of Hanwoo (Korean cattle) and insight into regions of homozygosity.
Kyung-Tai Lee, Won-Hyong Chung, Sung-Yeoun Lee, Jung-Woo Choi, Jiwoong Kim, Dajeong Lim, Seunghwan Lee, Gul-Won Jang, Bumsoo Kim, Yun Ho Choy, Xiaoping Liao, Paul Stothard, Stephen S Moore, Sang-Heon Lee, Sungmin Ahn, Namshin Kim and Tae-Hun Kim
BMC Genomics, 30 July 2013; 14(1): 519, 14 pp.
http://www.ncbi.nlm.nih.gov/pmc/articles/PMC3750754/pdf/1471-2164-14-519.pdf
Lateral gene transfer of family A DNA polymerases between thermophilic viruses, aquificae, and apicomplexa.
Thomas W. Schoenfeld, Senthil K. Murugapiran, Jeremy A. Dodsworth, Sally Floyd, Michael Lodes, David A. Mead, and Brian P. Hedlund.
Molecular Biology and Evolution, July 2013; 30(7): 1653-1664.
http://www.ncbi.nlm.nih.gov/pmc/articles/PMC3684859/
Fragmentation of Genomic DNA using Microwave Irradiation.
Yu Yang, and Jun Hang.
Journal of Biomolecular Techniques, July 2013; 24(2): 98–103
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