Patrick m. Gaffney educational background



Download 35.82 Kb.
Date11.02.2018
Size35.82 Kb.
#41048
PATRICK M. GAFFNEY

EDUCATIONAL BACKGROUND
Ph.D. Biological Sciences, SUNY Stony Brook, 1986

Fulbright Scholar, University of Cambridge, 1973-74

A.B. Zoology, University of California, Berkeley, 1973

ACADEMIC/PROFESSIONAL WORK EXPERIENCE
Professor, University of Delaware College of Marine Studies, 2002-present

Associate Director, Marine Biosciences Program, 2002-2013

Associate Professor, University of Delaware College of Marine Studies, 1993-2002

Assistant Professor, University of Delaware College of Marine Studies, 1987-1993

Sea Grant Postdoctoral Research Associate, Department of Ecology and Evolution, SUNY Stony Brook, 1986-1987

Research Assistant, Department of Ecology and Evolution, SUNY Stony Brook, 1982

Environmental Consultant, Jones & Stokes Associates, Inc., Sacramento, California,

1976-1978

Adjunct Professor, Centro de Investigaciones Biológicas de Noroeste (Baja California Sur, Mexico), 05/1996-present

REFEREED PUBLICATIONS
Bayha KM, Chang MH, Mariani CL, Richardson JL, Edwards DL, DeBoer TS, Moseley C, Aksoy E, Decker MB, Gaffney PM, Harbison, GR, McDonald, JH, Caccone, A. (2015) Worldwide phylogeography of the invasive ctenophore Mnemiopsis leidyi (Ctenophora) based on nuclear and mitochondrial DNA data. Biological Invasions 2015, 17:827-850.

Huo Z, Wang Z, Yan X, Gaffney PM (2013) Fertilization, survival, and growth of Crassostrea hongkongensis ♀ × Crassostrea ariakensis ♂ hybrids in Northern China. Journal of Shellfish Research 32, 377-385.

Zhang GF et al. (85 authors) (2012) The oyster genome reveals stress adaptation and complexity of shell formation. Nature 490, 49-54.

Kim W-J, Jung H, Gaffney PM (2011) Development of Type I genetic markers from expressed sequence tags in highly polymorphic species. Marine Biotechnology 13, 127-132.

Milbury CA, Lee JC, Cannone JJ, Gaffney PM, Gutell RR (2010) Fragmentation of the large subunit ribosomal RNA gene in oyster mitochondrial genomes. BMC Genomics 11, 485

Gaffney PM, Pascal CE, Barnhart JP, Grant WS, Seeb JE (2010) Genetic homogeneity of weathervane scallops in the Northeastern Pacific. Canadian Journal of Fisheries and Aquatic Sciences 67, 1827-1839

Kim W-J, Jung H, Gaffney PM (2010) Development of Type I genetic markers from expressed sequence tags in highly polymorphic species. Mar Biotech 10.1007/s10126-010-9280-4

Costa de Melo AG, Varela ES, Beasley CR, Schneider H, Sampaio I, Gaffney PM, Reece KS, Tagliaro CH (2010) Molecular identification, phylogeny and geographic distribution of Brazilian mangrove oysters (Crassostrea). Genetics and Molecular Biology 33, 564-572

Varney R, Galindo-Sánchez CE, Cruz P, Gaffney PM (2009) Population genetics of the eastern oyster Crassostrea virginica (Gmelin, 1791) in the Gulf of Mexico. Journal of Shellfish Research 28, 855-864.

Kuhn KL, Gaffney PM (2008) Population subdivision in the Antarctic toothfish (Dissostichus mawsoni) revealed by mitochondrial and nuclear single nucleotide polymorphisms (SNPs). Antarctic Science, 20, 327-338.

Galindo-Sánchez CE, Gaffney PM, Pérez-Rostro CI, et al. (2008) Assessment of genetic diversity of the eastern oyster Crassostrea virginica in Veracruz, Mexico using microsatellite markers. Journal of Shellfish Research, 27, 721-727

Ulrich PN, Colton CM, Hoover CA, Gaffney PM, Marsh AG (2007) Haplosporidium nelsoni (MSX) rDNA detected in oysters from the Gulf of Mexico and the Caribbean Sea. J Shellfish Res 26:195-199

Gaffney PM, Rupnow J, Domeier ML (2006) Genetic similarity of disjunct populations of the giant sea bass Stereolepis gigas. Journal of Fish Biology 70(Supplement A):111-124

Kuhn KL, Gaffney PM (2006) Preliminary assessment of population structure in the mackerel icefish (Champsocephalus gunnari). Polar Biology 29:927-935

Valles-Jimenez R, Gaffney PM, Perez-Enriquez R (2006) RFLP analysis of the mtDNA control region in white shrimp (Litopenaeus vannamei) populations from the eastern Pacific. Marine Biology 148:867-873

Gaffney PM (2006) The role of genetics in shellfish restoration. Aquatic Living Resources 19:277-282

Elfstrom CM, Gaffney PM, Smith CT, Seeb JE (2005) Characterization of 12 single nucleotide polymorphisms in weathervane scallop. Molecular Ecology Notes 5:406-409

Hedgecock D, Gaffney PM, Goulletquer P, Guo X, Reece K, Warr GW (2005) The case for sequencing the Pacific oyster genome. Journal of Shellfish Research 24:429-441

Hoover CA, Gaffney PM (2005) Geographic variation in nuclear genes of the eastern oyster, Crassostrea virginica Gmelin. Journal of Shellfish Research 24:103-112

Milbury CA, Gaffney PM (2005) Complete mitochondrial DNA sequence of the eastern oyster Crassostrea virginica. Marine Biotechnology 7:697-712

Smith PJ, Gaffney PM (2005) Low genetic diversity in the Antarctic toothfish Dissostichus mawsoni observed with mitochondrial and intron DNA markers. CCAMLR Science 12:43-51

Milbury CA, Gaffney PM, Meritt DW, Newell RIE (2004) Mitochondrial DNA markers allow monitoring of oyster stock enhancement in the Chesapeake Bay. Marine Biology 145:351-359

Bayha KM, Harbison GR, McDonald JH, Gaffney PM (2004) Preliminary investigation on the molecular systematics of the invasive ctenophore Beroe ovata. In: Dumont HJ, Shiganova TA, Niermann U (eds) Aquatic Invasions in the Black, Caspian, and Mediterranean Seas. Kluwer Academic Publishers, Dordrecht, p 167-175

Cruz P, Ibarra AM, Mejia-Ruiz H, Gaffney PM, Pérez-Enríquez R (2004) Genetic variability assessed by microsatellites in a breeding program of Pacific white shrimp (Litopenaeus vannamei). Marine Biotechnology 6:157-164

Reece KS, Ribeiro WL, Gaffney PM, Carnegie RB, Allen SK, Jr. (2004) Microsatellite marker development and analysis in the eastern oyster (Crassostrea virginica): confirmation of null alleles and non-Mendelian segregation ratios. Journal of Heredity 95:346-352



Gaffney PM (2003) Genomic approaches to marker development and mapping in the eastern oyster, Crassostrea virginica. In: Shimizu N, Aoki T, Hirono I, Takashima F (eds) Aquatic Genomics Steps Towards a Great Future. Springer-Verlag, Tokyo, p 84-91

Gaffney PM, Pierce JC, Mackinlay AG, Titchen DA, Glenn WK (2003) Pearl, a novel family of putative transposable elements in bivalve mollusks. Journal of Molecular Evolution 56:308-316

Smith PJ, Gaffney PM, Roberts CD (2003) Phylogenetic relationships of the silver trumpeter Latris pacifica (Teleostei, Percomorpha, Latridae) based on allozymes and mitochondrial cytochrome b sequences. Journal of the Royal Society of New Zealand 33:755-767

Smith PJ, McMillan PJ, Bull B, McVeagh SM, Gaffney PM, Chow S (2002) Genetic and meristic variation in black and smooth oreos in the New Zealand Exclusive Economic Zone. New Zealand Journal of Marine and Freshwater Research 36:737-750

Xu Z, Guo X, Gaffney PM, Pierce JC (2001) Chromosomal location of the major ribosomal RNA genes in Crassostrea virginica and Crassostrea gigas. Veliger 44:79-83

Smith PJ, Gaffney PM, Purves M (2001) Genetic markers for identification of Patagonian toothfish and Antarctic toothfish. Journal of Fish Biology 58:1190-1194

Brown BL, Franklin DE, Gaffney PM, Hong M, DenDanto D, Kornfield I (2000) Characterization of microsatellite loci in the eastern oyster, Crassostrea virginica. Molecular Ecology 9:2217-2219



Gaffney PM (2000) Molecular tools for understanding population structure in Antarctic species. Antarctic Science 12:288-296

Oliver JL, Gaffney PM, S K Allen J, Faisal M, Kaattari SL (2000) Protease inhibitory activity in selectively bred families of eastern oysters. Journal of Aquatic Animal Health 12:136-145

Orbacz EA, Gaffney PM (2000) Genetic structure of tautog (Tautoga onitis) populations assayed by RFLP and DGGE analysis of mitochondrial and nuclear genes. Fishery Bulletin 98:336-344

Pierce JC, Tan G, Gaffney PM (2000) Delaware Bay and Chesapeake Bay populations of the horseshoe crab Limulus polyphemus are genetically distinct. Estuaries 23:690-698

Smith P, Gaffney P (2000) Toothfish stock structure revealed with DNA methods. Water & Atmosphere 8:17-18

Lankford TE, Jr., Targett TE, Gaffney PM (1999) Mitochondrial DNA analysis of population structure in the Atlantic croaker, Micropogonias undulatus (Perciformes: Sciaenidae). Fishery Bulletin 97:884-890

Ó Foighil D, Gaffney PM, Wilbur AE, Hilbish TJ (1998) Mitochondrial cytochrome oxidase I gene sequences support an Asian origin for the Portuguese oyster Crassostrea angulata. Marine Biology 131:497-503

Alcivar-Warren A, Dunham R, Gaffney P, Kocher T, Thorgaard G (1997) First aquaculture species genome mapping workshop. Animal Genetics 28:451-452

Wilbur AE, Gaffney PM (1997) A genetic basis for geographic variation in shell morphology in the bay scallop, Argopecten irradians. Marine Biology 128:97-105

Wilbur AE, Orbacz EA, Wakefield JR, Gaffney PM (1997) Mitochondrial genotype variation in a Siberian population of the Japanese scallop, Patinopecten yessoensis (Jay). Journal of Shellfish Research 16:541-545

Carriker MR, Gaffney PM (1996) A catalogue of selected species of living oysters (Ostreacea) of the world. In: Kennedy VS, Newell RIE, Eble AF (eds) The Eastern Oyster Crassostrea virginica. Maryland Sea Grant College, College Park, p 1-18

Gaffney PM, Rubin VP, Hedgecock D, Powers DA, Morris G, Hereford L (1996) Genetic effects of artificial propagation: signals from wild and hatchery populations of red abalone in California. Aquaculture 143:257-266

Gaffney PM, Bushek D (1996) Genetic aspects of disease resistance in oysters. Journal of Shellfish Research 15:135-140

Gaffney PM (1996) Biochemical and population genetics. In: Kennedy VS, Newell RIE, Eble AF (eds) The Eastern Oyster Crassostrea virginica. Maryland Sea Grant College, College Park, p 423-441

Ó Foighil D, Gaffney PM, Hilbish TJ (1995) Differences in mitochondrial 16S ribosomal gene sequences allow discrimination among American [Crassostrea virginica (Gmelin)] and Asian [C. gigas (Thunberg) C. ariakensis Wakiya] oyster species. Journal of Experimental Marine Biology and Ecology 192:211-220



Gaffney PM (1994) Heterosis and heterozygote deficiencies in marine bivalves: more light? In: Beaumont AR (ed) Genetics and Evolution of Aquatic Organisms.

Gaffney PM, Allen SK, Jr. (1993) Hybridization among Crassostrea species: a review. Aquaculture 116:1-13

Gaffney PM, Bernat CM, Allen SK, Jr. (1993) Gametic incompatibility in wild and cultured populations of the eastern oyster, Crassostrea virginica Gmelin. Aquaculture 115:273-284

Guo X, Gaffney PM (1993) Artifical gynogenesis in the Pacific oyster, Crassostrea gigas: II. Allozyme inheritance and early growth. Journal of Heredity 84:311-315

Allen SK, Jr., Gaffney PM (1993) Genetic confirmation of hybridization between Crassostrea gigas (Thunberg) and Crassostrea rivularis (Gould). Aquaculture 113:291-300

Allen SK, Jr., Gaffney PM, Scarpa J, Bushek D (1993) Inviable hybrids of Crassostrea virginica (Gmelin) with C. rivularis (Gould) and C. gigas (Thunberg). Aquaculture 113:269-289



Gaffney PM, Davis CV, Hawes RO (1992) Assessment of drift and selection in hatchery populations of oysters (Crassostrea virginica). Aquaculture 105:1-20

Gaffney PM, Allen SK, Jr. (1992) Genetic aspects of introduction and transfer of molluscs. Journal of Shellfish Research 11:535-538

Gaffney PM, McGee B (1992) Multiple paternity in Crepidula fornicata (Linnaeus). Veliger 35:12-15

Ludwig AN, Gaffney PM (1991) Quantitative genetics of growth in the dwarf surfclam Mulinia lateralis (Say, 1822). Journal of Shellfish Research 10:451-453



Gaffney PM (1990) Enzyme heterozygosity, growth rate, and viability in Mytilus edulis: another look. Evolution 44:204-210

Gaffney PM, Scott TM, Koehn RK, Diehl WJ (1990) Interrelationships of heterozygosity, growth rate and heterozygote deficiencies in the coot clam, Mulinia lateralis. Genetics 124:687-699

Gaffney PM, Diehl WJ (1986) Growth, condition and specific dynamic action in the mussel Mytilus edulis recovering from starvation. Marine Biology 93:401-409

Diehl WJ, Gaffney PM, Koehn RK (1986) Physiological and genetic aspects of growth in the mussel Mytilus edulis. I. Oxygen consumption, growth and weight loss. Physiological Zoology 59:201-211

Diehl WJ, Gaffney PM, McDonald JH, Koehn RK (1985) Relationship between weight-standardized oxygen consumption and multiple-locus heterozygosity in the mussel, Mytilus edulis. In: Gibbs PE (ed) Proceedings of the 19th European Marine Biology Symposium. Cambridge University Press, Cambridge, p 529-534

Gaffney PM, Scott TM (1984) Genetic heterozygosity and production traits in natural and hatchery populations of bivalves. Aquaculture 42:289-302

Koehn RK, Gaffney PM (1984) Genetic heterozygosity and growth rate in Mytilus edulis. Marine Biology 82:1-7

Rodhouse PG, Gaffney PM (1984) Effect of heterozygosity on metabolism during starvation in the American oyster Crassostrea virginica. Marine Biology 80:179-187

Gaffney PM (1980) On the number of Patella species in south-west England. Journal of the Marine Biological Association of the United Kingdom 60:565-574

Eanes WF, Gaffney PM, Koehn RK, Simon CM (1977) A study of sexual selection in natural populations of the milkweed beetle, Tetraopes tetraophthalmus. In: Christiansen FB, Fenchel TM (eds) Measuring Selection in Natural Populations. Springer-Verlag, Berlin, p 49-64



Gaffney PM (1975) Roots of the niche concept. American Naturalist 106:490

Gaffney PM (1973) Setal variation in Halosydna brevisetosa, a polynoid polychaete. Systematic Zoology 22:171-175

TECHNICAL REPORTS
Gaffney PM, Ó Foighil D, Curole, J (2007) Peer Review Group Oyster EIS Report on Oyster Genetics, Maryland Environmental Service

Smith P, Gaffney P (2000) Population genetics of Patagonian toothfish (Dissostichus eleginoides) and fillet identification of Patagonian toothfish and Antarctic toothfish (D. mawsoni). CCAMLR, Hobart, Australia



Gaffney PM, Orbacz EA, Yu Z (1998) Using the DCode system to identify DNA sequence variation for studies of population structure in marine organisms. Bio-Rad Technical Note 2329

Allen SK, Jr., Gaffney PM, Ewart JE (1993) Genetic improvement of the eastern oyster for growth and disease resistance in the Northeast



SELECTED KEYNOTE/INVITED PRESENTATIONS
“Oyster genomics: pearl diving for dummies”, Victoria University of Wellington, Wellington, New Zealand (2011)

“BAC haplotypes show extensive sequence polymorphism in the Pacific oyster genome”, 5th International Conference on Genomics, Shenzhen, China (2010)

“Genetic Monitoring of Oyster Stock Enhancement”, South China Sea Institute of Oceanology, Guangzhou, China (2010)

“Genetic Monitoring of Molluscan Stock Enhancement”, Science Consortium for Ocean Replenishment: Workshop on Assessment and Management of Genetic Diversity in Marine Stock Enhancement Programs, San Diego (2010)

“Type I markers for linkage mapping and population genetics in Crassostrea”, International Symposium on Genetics in Aquaculture, Montpellier, France (2006)

“Better Shellfish Restoration through Genetics?”, Eighth International Conference on Shellfish Restoration, Brest, France (2005)

Testimony before the U.S. House of Representatives Committee on Resources hearing on the eastern oyster, Washington, D.C. (2005)

“SNPs in oysters for population studies and genetic mapping“, Second International Symposium on Aquatic Genomics, Tokyo, Japan (2003)

“Molecular monitoring of oyster stock enhancement efforts in Chesapeake Bay using high-throughput mitochondrial SNP genotyping”, The Interface Between Aquaculture and Stock Enhancement: Assessing the Promise of Replenishing Marine Fisheries, Center of Marine Biotechnology, Baltimore, MD (2002)

“Progress with the selective breeding program for C. virginica”, National Academy of Sciences Workshop on Non-native Oysters in the Chesapeake Bay, Fredericksburg, VA (2002)

“Selective breeding for disease resistance in Crassostrea virginica”, National Academy Workshop on Non-native Oysters in Chesapeake Bay, Fredericksburg, VA (2002)

“Molecular Tools for Analyzing Marine Biodiversity and Abundance”, Scientific Committee on Oceanic Research Working Group 118, Census of Marine Life Initiative, Lima, Peru (2002)

“Genetic Impacts of Shellfish Aquaculture and Transport”, Exploring On-bottom Shellfish Aquaculture for Alaska, Anchorage, AK (2001)

“Genomic approaches to marker development and mapping in the eastern oyster, Crassostrea virginica, International Symposium on Genetics in Aquaculture, Tokyo, Japan (2000)

“Molecular Tools for Understanding Population Structure in Antarctic Species”, ICSU Subcommittee on Antarctic Research Workshop on Evolutionary Biology of Antarctic Organisms, Curitiba, Brazil (1999)

“Oceans in the 21st Century: Molecular Technology and Biodiversity”, NHK Television special program, Tokyo, Japan (1997)



EDITORIAL WORK/CONSULTANCIES/REVIEW PANELS
Editorial board, Estuaries (1992-1995)

Marine Biotechnology (2004-present)

review panels for NSF, NMFS, Sea Grant, USDA, international agencies

proposals reviewed for 26 agencies

manuscripts reviewed for 37 journals

DNA forensics for commercial fish and invasive molluscs (2001-present)

APPOINTMENTS AND ELECTED POSITIONS
Delaware Shellfish Advisory Council (2002-present)

AWARDS
Phi Beta Kappa

University of California President's Undergraduate Fellowship

Outstanding Undergraduate, Dept. of Zoology, UC Berkeley

Fulbright-Hays Fellowship (Cambridge University, UK)

Visiting scientist, National Institute of Water and Atmospheric Research (Wellington, New Zealand)

CSIRO Frohlich Fellow (Hobart, Australia)

Visiting scientist, Observatoire Océanologique de Banyuls sur Mer, France

Fulbright Senior Specialist (Victoria University of Wellington, New Zealand)



PROFESSIONAL AFFILIATIONS/ MEMBERSHIPS
Genetics Society of America

National Shellfisheries Association

Phi Beta Kappa

Sigma Xi

SELECTED PROFESSIONAL / COMMUNITY SERVICE
Coordinator, Oyster Subcommittee, Aquaculture Species Genome Mapping Project (USDA NRSP-8), 1997-present

Steering Committee, Oyster Genome Consortium (2005 – present)

Board of Directors, USDA Northeastern Regional Aquaculture Center, 1995-present

Workgroup facilitator, Oyster Research and Restoration in U.S. Coastal Waters-Strategies for the Future (Annapolis, MD)

Invited panelist, Crassostrea ariakensis Workshop-EPA Chesapeake Bay Program (Annapolis, MD)

Invited presentation on eastern oyster genetics to NOAA Status Review team (Silver Spring, MD)

ICSU Subcommittee on Antarctic Research Workshop on Evolution in the Antarctic (EVOLANTA), Kent, UK (2000)

Co-organizer, US-France Cooperative Program in Oceanography Joint Aquaculture Genetics Workshop, La Tremblade, France (2002)

Participant, Scientific Committee on Oceanic Research Working Group 118, Census of Marine Life Initiative, Peru (2002)

Executive Committee, USDA Molluscan Broodstock Program, (1996-1998)

Organizer, Aquaculture Species Genome Workshop, Plant and Animal Genome Conference, San Diego, CA (2001)

External Ph.D. examiner (Australia, Canada, South Africa)

Session moderator for National Shellfisheries Association, Genetics & Evolution of Aquatic Organisms Symposium, Plant & Animal Genome Aquaculture Workshop, Society for the Study of Evolution

Teaching and service on graduate student committees, Centro de Investigaciones Biológicas de Noroeste (Baja California Sur, Mexico), 1996-present





Download 35.82 Kb.

Share with your friends:




The database is protected by copyright ©ininet.org 2024
send message

    Main page