LECTURE 2
CLONING, EXPRESSION AND PRELIMINARY CHARACTERIZATION OF XYLULOSE 5-PHOSPHATE PHOSPHOKETOLASE FROM LACTOCOCCUS LACTIS
Andrei VACARU1, Alexandru S. DENES1, Daniela STANGA1, Octavian BARZU2 and Stefan E. SZEDLACSEK1
1Institute of Biochemistry, Department of Biochemistry, 77700 Bucharest/ROMANIA
2Institute Pasteur, Paris/FRANCE
stefan.szedlacsek@biochim.ro
Heterofermentative degradation of pentoses in lactic acid bacteria takes place via the phosphoketolase pathway. Xylulose 5-phosphate phosphoketolase (EC 4.1.2.9) is the central enzyme of this pathway. In presence of inorganic phosphate, this enzyme catalyses conversion of xylulose 5-phosphate (X5P) into glyceraldehyde 3-phosphate and acetylphosphate. So far, a limited number of molecular data are available for phosphoketolases, particularly for those from lactic acid bacteria (LAB).
We report here the cloning, the expression in a prokaryotic system, and the preliminary characterization of X5P phosphoketolase of Lactococcus lactis ssp. lactis (strain IL1403), one of the most important representatives of LAB in dairy industry. Phosphoketolase gene of L. lactis (termed ptk) was cloned by using a step-by-step strategy, starting from five DNA fragments of ptk, each obtained by PCR amplification on the basis of a genomic template. The 2469 bp long sequence was then transferred into a prokaryotic expression vector. Optimized expression led finally to a soluble protein, which was purified using an affinity based approach. The protein preparation thus obtained was electrophoretically homogeneous and migrated in SDS-PAGE at 93.3 kDa, in accordance with the theoretical value derived from the enzyme sequence. Using a spectrophoptometric, coupled assay, the preliminary kinetic analysis was also performed. It demonstrates that his enzyme is thiamine pyrophosphate-dependent, possesses a relatively high specific activity and has a specific dependence on substrates concentrations and pH values. Altogether, these features define X5P phosphoketolase of L. lactis as a novel enzyme displaying a particular set of characteristics among other phosphoketolases.
LECTURE 3
Y-CHROMOSOME MICRODELETIONS AMONG INFERTILE MEN FROM THE REPUBLIC OF MACEDONIA
Dijana Plaseska-Karanfilska 1), Toso Plaseski 2), Cedomir DIMITROVSKI 2), Branka KOCEVA 2), Georgi D.EFREMOV 1)
1) Macedonian Academy of Sciences and Arts, Research Center for Genetic Engineering and Biotechnology 2) Clinic forEndocrinology and Metabolic Disorders, Faculty of Medicine, Skopje , Republic of Macedonia
Correspondence: dijana@manu.edu.mk
Microdeletions in the three non-overlapping regions of the Y-chromosomes are associated with male infertility and have an important role for genetic counseling of the infertile couple and for their decision concerning the therapeutic options. The main aims of this study were: to determine the prevalence of Y microdeletions among the infertile males from the Republic of Macedonia; to determine the breakpoints and the size of the deletions; to correlate the genotype with the phenotype; and to introduce the screening for Y chromosome microdeletions in the routine clinical practice. Fifty fertile males and 116 infertile males were included in the study. The PCR analysis of six STS loci was used for the screening of Y chromosome microdeletions. The breakpoints and the size of the deletions were determined by analysis of additional STS flanking markers. A total of 7 patients showed presence of Y microdeletion, of which 6 had AZFc deletions, and one AZFb+c deletion. Four of the 6 patients with AZFc microdeletion carried an identical deletion with a size of 3.5 Mb, while in the other 2 patients the deletion was larger than 3.5 Mb. A 45X0/46XY mosaicism was found in the patient with AZFb+c deletion. The Y microdeletions were detected in six patients with azoospermia and one with severe oligozoospermia. No deletion was found among the fertile males, patients with normozoospermia and oligozoospermia (>5x106/ml). The prevalence of Y microdeletions among the infertile males from the Republic of Macedonia is 6.4%, among patients with azoospermia – 17.4% and among those with severe oligozoospermia - 3.6%. Different testicular defects were found among the patients with AZFc deletions (SCOS, hypospermatogenesis and maturity arrest). Testicular volumes were reduced in the patients with Y microdeletions, FSH concentrations were high and LH and testosterone were within the normal range.
OCTOBER 14, 2003 – TUESDAY
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HALL A
ORAL PRESENTATION 1
SCREENING OF RPGR GENE IN TURKISH RETINITIS PIGMENTOSA PATIENTS
Ceren Acar1, Köksal Özgül1, Adam Reddick2, Anand Swaroop2, Cihan Öner1 and Ay Öğüş1
1Hacettepe University Faculty of Science Biology Department 06532, Beytepe Ankara/TURKEY
2University of Michigan Ophthalmology and Visual Science Department Ann Arbor MI/USA
ceren@hacettepe.edu.tr
Retinitis pigmentosa (RP) is a heterogeneous group of retinal dystrophies that is characterized by photoreceptor degeneration. RP causes night blindness, a gradual loss of peripheral visual field and eventual loss of central vision. The disease can be inherited in autosomal dominant, autosomal recessive, X-linked and digenic modes. Twenty-six genes have been identified or cloned for RP and additional 14 genes mapped but not yet identified. Five loci have been mapped for XLRP. Among these, RP3 accounts for 70%-90% and RP2 accounts for 10%-20% of genetically identifiable disease. Mutations in the RPGR gene are associated with RP3 subtype of XLRP, a severe non-syndromic form of retinal degeneration. Mutations in RPGR have been identified in exons 1-14; however, ORF15 is the hot spot for mutations accounting for 50-60% of XLRP in Europe and North America. ORF15 mutations have also been detected in simplex RP males. In Turkey, there is no reported study on the molecular genetics of XLRP. Here, we present the analysis of ORF15 in 19 patients with RP from Turkey. These patients were the only ones showing the disease phenotype in their families. DNA samples were screened for RPGR-ORF15 by sequence analysis. These DNA samples were also analyzed by SSCP analysis for the following genes: ABCA4, rhodopsin, CRX, RPE65, RDS/peripherin and linkage and haplotype studies were performed for the genes PDE6A, PDE6B, LRAT, RALBP, TULP1.
ORAL PRESENTATION 2
METHYLATION PATTERN AND DNaseI HYPERSENSITIVITY WITHIN THE INTERGENIC SPACER OF RIBOSOMAL RNA GENES IN EXCISED COTYLEDONS OF CUCURBITA PEPO L. (ZUCCHINI) AFTER CYTOKININ TREATMENT
Evgueni D. ANANIEV1, Galina ABDULOVA1, Petar GROZDANOV2, Luchezar KARAGYOZOV2
1Institute of Plant Physiology “M. Popov”, 2 Institute of Molecular Biology, Bulg. Acad. Sci., “Acad. G. Bonchev” str., block 21, 1113, Sofia/ BULGARIA
ananiev@obzor.bio21.bas.bg
“Run-on” transcription experiments with isolated nuclei have showed that treatment of detached marrow cotyledons with the cytokinin 6-benzyladenine (BA) resulted in 2-4-fold stimulation of RNA polymerase I activity. In this work we studied the methylation pattern of the intergenic spacer (IGS) of rRNA genes as a measure of their activity using the restriction enzymes Msp I and Hpa II and the method of “indirect end labeling”. A cloned fragment containing the 5/ portion of 18S rRNA gene from flax was used as DNA probe. Results showed heavy methylation of the rRNA genes. As judged from the almost total lack of digestion with Hpa II, in the repeating rDNA units there were either no methylation free regions or just a few were observed. A hypomethylated Hpa II site near the promoter region was detected in a very small number of rDNA repeats. Digestion with Msp I affected nearly 50% of the repeating units. This suggested that in addition to –CpG- sequences, methylation in –CpNpG- might not be random. The methylation pattern of IGS was not changed upon hormonal treatment of cotyledons DNase I assay with isolated nuclei revealed defined regions of DNase I hypersensitivity in IGS which coincide with the regulatory elements. The DNase I hypersensitive sites in IGS were mapped to the active promoter (transcription initiation site –TIS), to transcription termination site (TTS) and the “spacer” promoter region. No appreciable differences in DNase I hypersensitivity of IGS were found after hormone treatment of cotyledons nor in differentiated leaves of intact seedlings. The obtained results are discussed with respect to the possible molecular mechanisms of cytokinin regulation of rRNA gene transcription.
ORAL PRESENTATION 3
GENE POLYMORPHISM OF ENDOTHELIAL MARKERS IN RENAL DYSFUNCTION
Constantina HELTIANU, Gabriela COSTACHE, Mihaela BODEANU, Alexandra DOBRIN, Kemal AZIBI*, Livia POENARU*, Maya SIMIONESCU
Institute of Cellular Biology and Pathology “N.Simionescu”, Bucharest, ROMANIA, *Department of Genetic, Faculty of Medicine Cochin Port-Royal, University Rene Descartes, Paris, FRANCE
iheltianu@simionescu.instcellbiopath.ro
Introduction: Renin-angiotensin system is implicated in the progression of kidney disease in diabetes mellitus (DM). Another disease in which the kidneys are dramatically affected is the monogenic X-linked Fabry disease. The Latter is characterized by progressive accumulation of lipids (due to the deficiency of alpha-galactosidase A activity) preferentially in vascular endothelial cells (EC) which become activated.
Aim: The purpose of the study was to analyze whether the gene encoding endothelial markers such as endothelial nitric oxide synthase (eNOS), and angiotensin converting enzyme (ACE) influence the development of nephropathy in DM and Fabry disease.
Methods: To test this hypothesis about 200 DM subjects, 28 hemizygot unrelated Fabry patients and 120 healthy individuals were genotyped for the intron 4VNTR and Glu298Asp of eNOS, and I/D variant of ACE to analyze their association with the disease. The 4VNTR eNOS and I/D ACE variants were determined by PCR amplification followed by agarose gel electrophoresis. The Glu298Asp of eNOS was assessed by RFLP-PCR technique and then separated by polyacrilamide gel electrophoresis.
Results: There is no association of eNOS and ACE gene variants with the presence of renal dysfunction in diabetic patients. In the case of Fabry disease, both eNOS gene polymorphism were significantly associated with the affliction namely P=0.02, OR=2.7, 95%CI=1.1-6.4 for Glu298Asp, and P=0.05, OR=2.6, 95%CI=1.0-7.0 for intron 4 VNTR. Carriers of eNOS 298Asp allele were overrepresented (P=0.04) in Fabry subgroup with renal failure when compared with patients without it, giving a 4.64-fold increased risk (95% CI=2.43-6.85) of the incidence of renal dysfunction. The distribution of ACE D allele was similar among the Fabry patients and control subjects.
Conclusion: These findings suggest that the eNOS polymorphism might influence the development of renal failure in Fabry disease.
This project was financially supported by the Romanian Academy (GAR 125) and INSERM France (PECO 637).
ORAL PRESENTATION 4 EXPRESSION OF ESTROGEN RECEPTOR β IN BREAST CARCINOMAS
Vesna VRANIĆ MANDUSIĆ1, Dusan POPOV-CELKETIĆ1, Ksenija KANJER2 and Dragica NIKOLIĆ-VUKOSAVLJEVIĆ2
1 ”Vinča” Institute of Nuclear Sciences, Laboratory for Radiobiology and Molecular Genetics, Belgrade, Serbia and Montenegro
2 Institute for Oncology and Radiology of Serbia, Belgrade, Serbia and Montenegro
vvranic@vin.bg.ac.yu
To determine whether estrogen receptor beta (ERβ) expression is associated with estrogen receptor α (ERα) and progesterone receptor (PR) status we compared its expression with levels of ERα and PR. Thirty two samples of breast carcinomas were examined for ERα, ERβ and PR. Levels of ERα and PR were measured by conventional biochemical techniques. Expression of ERβ mRNA was determined by RT-PCR. Briefly, RNA from tumor samples was isolated according the method of Chomczynski and Sacchi (1987); total RNA was reverse transcribed with oligo dT primer; PCR was performed using the specific primers positioned in exons 4 and 6. PCR (254 bp product) were analyzed on polyacrilamide gel electrophoresis. In 9 carcinomas ERβ mRNA was not detected, and 23 carcinomas (71,8%) were positive for ERβ expression. Level of expression was quantified densitometricaly and relatively ranged from 1 to 3. Results conform positive correlation between ERα and PR status. Analysis of correlation between ERα and ERβ expression as wel as ERβ expression and PR shows:
absence of any correlation between ERα and ERβ;
statistical significant (hi-square test, p=0,03) inverse correlation between ERβ and PR status.
Therefore, expression of ERα and ERβ are independent one from the other, but increased expression of ERβ is connected with decreasing of ER functionalities represented through decreased PR expression.
OCTOBER 15 , 2003 - WEDNESDAY
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HALL A
LECTURE 1
THE ROLES OF CYP1A AND CYP2E IN CHEMICAL CARCINOGENESIS
Emel ARINÇ
Graduate Program in Biochemistry, Department of Biology, Middle East Technical University, 06531, Ankara, TURKEY
earinc@metu.edu.tr
It has been established that approximately 80% of human cancers are attributable to environmental agents and about 70% of the human cancers are caused by chemical compounds. The majority of the organic carcinogens is not reactive as such but must undergo enzymatic reactions to form electrophilic species. The first step in biotransformation is usually the oxidative step, catalyzed by microsomal cytochrome P450 (CYP) dependent monooxygenases. Upto now more than 2000 P450 genes are sequenced and 265 P450 families have been identified and 18 of them are found in humans. Although other P450s and other mechanisms may activate the carcinogens, CYP1A enzymes are the most significant and 90% of the known carcinogens are metabolically activated by CYP1A to the proximate and ultimate carcinogens.
Persistent organic pollutions such as polyaromatic hydrocarbons (PAHs), dioxins, polychlorinated biphenyls (PCBs) specifically induce CYP1A1 through Ah receptor mediated mechanism. At the same time, CYP1A1 mostly converts PAH- and PCB-type precarcinogens to their carcinogenic epoxides or other oxygenated metabolites. These epoxides, in turn bind DNA covalently forming DNA-adducts which may cause cancer in the years to come. Thus induction of CYP1A1 is used to measure both exposure and resulting toxic carcinogenic effects of these types of organic pollutants. (Arınç, E., Şen, A., Bozcaarmutlu, A.: Pure & Appl. Chem. 72, 985-994, 2000). Greater CYP1A1 induction may result in high levels of activated carcinogens, and consequently to higher degree of persistent DNA-adduct formation or to enhanced oxidative DNA damage.
Good correlation between smoking and lung cancer is established. Individuals with a high inducible phenotype CYP1A1 show high risk of lung cancer. Gene-environment interactions are more pronounced at lower levels of cigarette exposure in which the susceptibility to lung cancer increased in the case of patients with either CYP1A1 mutated alleles and GSTM1 null gene.
On the other hand, CYP1A2 activates many arylamines and amides present in food and cigarette smoking. CYP1A2 exhibits polymorphisms and inducibility. Aflatoxin B1 (AFB1) must be activated to a reactive epoxide prior to exerting carcinogenic effects. CYP1A2 is the predominant human CYP enzyme involved in the activation of AFB1. In the presence of hepatitis B virus (HBV), a relative risk for liver cancer upon exposure of AFB1 increased 30-fold.
CYP2E1 is also involved in chemical carcinogenesis, both in the metabolic activation of small molecular weight organic chemicals and in the generation of ROS. N-Nitrosodimethylamine (NDMA) is a procarcinogen that is activated by CYP2E1 dependent NDMA N-demethylase. NDMA is known to be carcinogenic in liver, kidney and lung. Pyridine, constituent of tobacco and tobacco smoke, has tumor-promoting and teratogenic activities. Following in vitro pyridine treatment of rabbits, NDMA N-demethylase activity of both liver and lung is stimulated by 6.9- and 5.2-fold, respectively indicating that pyridine increases the metabolic activation of NDMA and in turn, may potentiate formation of liver and lung cancers significantly (Arınç, E., Adalı, O., Gençker-Özkan, A. M.: Arch. Toxicol., 34, 329-334, 2000). In addition, experiments carried out in our laboratory demonstrated that in the experimentally induced diabetic rabbits, both CYP2E1 and NDMA N-demethylase activity have been increased about two-fold in kidney and liver of rabbits. Therefore, it is expected that the incidence of tumor formation due to exposure to NDMA will be more pronounced in diabetic state because of CYP2E1 induction.
LECTURE 2
CELL CYCLE REGULATION AND GENOME INTEGRITY
Z. Lygerou
Department of Gen Biology, Medical School, University of Patras, Greece
lygerou@med.upatras.gr
For cells to maintain genome integrity, S-phase must alternate with mitosis at every cell cycle. Licensing of DNA for replication takes place only after completion of mitosis and ensures once per cell cycle replication.
Cdt1, a central licensing factor conserved across evolution, is tightly controlled in human cells, so that it is present only in the G1 phase, when licensing is legitimate. Over-expression of Cdt1 leads to genomic instability. We have shown that ubiquitin dependent proteolysis ensures that Cdt1 is destroyed as soon as S-phase starts. Cdt1 is undetectable in cells accumulating cyclin A, suggesting that phosphorylation by cdk2/cdc2 – cyclin A complexes targets Cdt1 for degradation. Geminin, a molecular inhibitor of Cdt1, accumulates in cells which do not contain Cdt1, suggesting that Geminin’s inhibitory function over Cdt1 might be redundant for the majority of the mammalian cell cycle. When primary cells exit the cell cycle to G0, both Cdt1 and Geminin protein and mRNA levels are decreased. In contrast, cancer cells over-express both these proteins.
In order to study the localization, dynamics and interactions of licensing factors in the living cell, we constructed fusions of Cdt1 and Geminin to Green Fluorescent Protein (GFP), Cyan Fluorescent Protein (CFP) and Yellow Fluorescent Protein (YFP) and characterized their behavior after transfection into mammalian cultured cells. Time-lapse microscopy and fluorescence lifetime imaging microscopy (FLIM) allows us to identify the location and timing of protein-protein and protein-DNA interactions as cells progress through the cell cycle.
OCTOBER 15, 2003 – WEDNESDAY
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HALL A
ORAL PRESENTATION 1
the effect of InsulIn level on steroId receptors
Mojca Vulović, Goran KORIĆANAC, Snežana RADIVOJŠA‚ Zorica ŽAKULA, Nevena RIBARAC-STEPIĆ
Laboratory for Molecular Biology and Endocrinology, “Vinča“ Institute of Nuclear Sciences, P.O. Box 522, 11001 Belgrade/Serbia and Montenegro
mojca@rt270.vin.bg.ac.yu
Steroid receptors are key molecules in steroid hormone action. It has been proposed that a nonsteroidal hormone such as insulin may exert an influence on steroid receptors and alter the cell responses to steroid hormone action. Diabetes mellitus is very frequent metabolic disorder that also has implications on steroid hormone action. The main goal of the presented study was to elucidate the effects of insulin treatment and insulin deficiency on steroid receptors.
The experiments were performed on 3-months-old male Wistar rats. Intact and streptozotocin-pretreated rats (60mg/kg, 7 days before hormone treatment) were injected with insulin (200g/kg) or hormonal solvent 3h before sacrifice. Protein contents of estrogen (ER), progesterone (PR), androgen (AR) and glucocorticoid receptors (GR) in liver were analyzed by immunoblotting method using appropriate specific antibodies.
The obtained results point out that streptozotocin did not cause significant changes in protein content of any kind of analyzed steroid receptors. Insulin injection significantly decreased the AR protein content in intact rats, while there were no changes in protein content of other three analyzed steroid receptors in rat liver. Insulin given to insulin-deficient animals did not cause changes in steroid receptor content compare to intact rats. However, in comparison to diabetic rats there was the significant decrease in PR content, whereas protein contents of other steroid receptors were unchanged.
The presented data indicate that insulin treatment and insulin deficient state did not alter the protein content of ER and GR in rat liver. The levels of PR and AR were not influenced by streptozotocin treatment, while, depend on endogenous level of insulin, hormone treatment decreased their content.
The research was supported by grant from Ministry of Science, Technology and Development, Republic of Serbia: ”Insulin and steroid receptors as mediators of hormone actions and their cross-talk under physiological and nonphysiological conditions”. (Grant number 1999).
ORAL PRESENTATION 2
MOLECULAR ANALYSIS OF THE ABCA4 GENE IN TURKISH PATIENTS WITH STARGARDT DISEASE AND RETINITIS PIGMENTOSA
Rıza Köksal ÖZGÜL1, Hakan DURUKAN2, Ayşe TURAN3, Cihan ÖNER1, Ay ÖĞÜŞ1, Debora B. FARBER4
1 Hacettepe University, Department of Molecular Biology, Beytepe-Ankara,Turkey
Gülhane Military Medical Academy, Department of Ophthalmology, Ankara,Turkey
Numune Research and Training Hospital, Department of Ophthalmology, Ankara,Turkey
University of California, Los Angeles (UCLA), Jules Stein Eye Institute , Los Angeles, USA
rkozgul@hacettepe.edu.tr
Stargardt disease (STGD), the most prevalent autosomal recessively inherited macular dystrophy is characterized by severe reduction of central visual acuity and leading to partial or complete blindness due to photoreceptor degeneration. The responsible gene for STGD encodes a ATP-binding cassette transporter, ABCA4 which has been shown to be involved in retinoid transport in the retina. Molecular characterization of the ABCA4 gene led to the identification of many mutations in Stargardt disease, cone-rod dystrophy (CRD), autosomal recessive retinitis pigmentosa (arRP) and age- related macular degeneration (AMD). By the screening of the ABCA4 gene in various types of inherited retinal degenerations, more than two hundred disease-associated mutations reported in different populations.
In this study, all fifty exons and flanking intronic sequences of the ABCA4 gene were screened by Single Strand Conformation Polymorphism (SSCP) in a cohort of 40 Turkish patients with STGD and arRP. After SSCP analysis, DNA fragments showing different migration patterns were sequenced.
Our results revealed the presence of three novel mutations (C54G, T829M, IVS19-6C>A), two mutations previously reported (R212C, IVS28+4C>T) and several polymorphic changes in the ABCA4 gene among Turkish patients affected with Stargardt and arRP.
This is the first report on the mutation profile of the ABCA4 gene in Turkish patients. Further studies will be helpful in understanding of complex genotype- phenotype relationship in ABCA4 gene in our population.
ORAL PRESENTATION 3
MITOCHONDRIAL ENZYME ACTIVITIES AND MtDNA POLYMORPHISMS IN PARKINSON’S DISEASE
Meltem MÜFTÜOĞLU1, Özlem DALMIZRAK1, Bülent ELİBOL2, Ayşe ERCAN1, Gülnihal KULAKSIZ1, Hamdi ÖĞÜŞ1, Turgay DALKARA2 and Nazmi ÖZER1
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